Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05779 ATGGATGGCGCGCTTCCCTCCTCCGCCGCAACTGTCGCCGCCGGGACCGGAGGTCCGGCGCCGTTCCTTCTGAAGACCTACGACATGGTGGATGATTCCTCCACCGACGACATCGTTTCGTGGAGCTCCACCAACACCAGCTTCGTCGTTTGGAACCCTCCCGAGTTCGCTCGCCTTCTTCTCCCAACCTATTTCAAGCACAACAACTTCTCCAGCTTCATCCGTCAGCTCAATACCTATGGATTTCGAAAAATACATCCTGAGCGATGGGAGTTTGCCAATGATGATTTTATAAAAGATCAAAAGCATCTTCTTAAGAATATACACCGCAGAAAACCTATCCACAGTCATAGTCATCCTCCGGGTACTGTTGTAGATCAAGAAAGGGCAGCATTTGAGGAAGAAATAGAGAAACTTTCACGTGAGAAAAGTTCTCTTGAATCCAATATTTTTAACTTCAAACAACATCAGTCAACAGCAAAGGTTCGATTTGAAGAGTTTCAGCAGCGGTTAGATGCTATAGAGAAGAGGCAGAAACATTTGCTGAACTACTTTGAGAAGGCTCTTCTGAATCCTACTTTTGTTGAACATCTTTCACGCAAAATTGAATCCATGGATTTATCAGCATATAATAAGAAAAGGCGGTTGCCTCAGGTTGATCACTTGCAGCCAGTTGCCGAAAGTAGCTTTGTTGACAATCAGAGCAATCTTAGAATGGAATTTGGGAATGTTTTCCATCAAGATTTCTCAAATAAACTCAGACTGGAATTGTCACCAGCTGTTTCAGATATGAACTTAGTGTCACGTAGCACACAGAGTTCAAATGAAGATGGGGAAAGCCCACATAAGAAGCTATCTGAAGGAGAACTGAAAGGAGCGCAGACAAGAACAGCTCTTGCATTTGCACCTGAAACATTAGAGCTTGCAGATACCGGGGCATCTTTTACTTTTAAGATGGATTCTTGTTTATCACGAAGAGCAACTACTGCTGAGAGCTCAAAACTGCACTCTTTGGAGCCAAGTAGTGAAGAAGGTGATAGTAATATATCCTGCCAACTAAATTTAACTCTAGCATCTTGTCCATTTCCAGTCAACAGAAATTCATTCTCGGCCCGGTCACCCCAAATAGACTGTCAAGAAATTGGCAAATTGGCAGAATCAAGATTTTATGCCAGTGGTAAAGAATCTGATAATGGAGCTTCCTTAGATCGACCAAATGTAGCTAATGAGGGTACCAATTTAGCTTCCACACAGGAAGCTCCAAGTAACAACCAAGTTAGCCCAGCCGCTCCAGATAGAGTGAATGATGTTTTTTGGGAACAGTTCCTTACTGAAAGACCAGGCTGTTCAGACAATGAAGAGGCTATATCCAACTATAGAGCCAACCCCTATGATGAACAAGAGGAAGGGCGGTCAGTTCATGGAATCTCTAGAAACATTAAGAATATGGATCAGCTCACACTTTGA 1467 0.4335 MDGALPSSAATVAAGTGGPAPFLLKTYDMVDDSSTDDIVSWSSTNTSFVVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIHPERWEFANDDFIKDQKHLLKNIHRRKPIHSHSHPPGTVVDQERAAFEEEIEKLSREKSSLESNIFNFKQHQSTAKVRFEEFQQRLDAIEKRQKHLLNYFEKALLNPTFVEHLSRKIESMDLSAYNKKRRLPQVDHLQPVAESSFVDNQSNLRMEFGNVFHQDFSNKLRLELSPAVSDMNLVSRSTQSSNEDGESPHKKLSEGELKGAQTRTALAFAPETLELADTGASFTFKMDSCLSRRATTAESSKLHSLEPSSEEGDSNISCQLNLTLASCPFPVNRNSFSARSPQIDCQEIGKLAESRFYASGKESDNGASLDRPNVANEGTNLASTQEAPSNNQVSPAAPDRVNDVFWEQFLTERPGCSDNEEAISNYRANPYDEQEEGRSVHGISRNIKNMDQLTL. 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05779 488 MobiDBLite consensus disorder prediction 464 488 - -
Seca12g05779 488 Pfam HSF-type DNA-binding 22 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g05779 488 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 280 IPR027725 -
Seca12g05779 488 FunFam Heat shock transcription factor 1 15 112 - -
Seca12g05779 488 MobiDBLite consensus disorder prediction 276 290 - -
Seca12g05779 488 SUPERFAMILY "Winged helix" DNA-binding domain 18 111 IPR036390 -
Seca12g05779 488 ProSitePatterns HSF-type DNA-binding domain signature. 61 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g05779 488 SMART hsfneu3 18 111 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g05779 488 Gene3D - 16 112 IPR036388 -
Seca12g05779 488 PRINTS Heat shock factor (HSF) domain signature 22 45 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g05779 488 PRINTS Heat shock factor (HSF) domain signature 60 72 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g05779 488 PRINTS Heat shock factor (HSF) domain signature 73 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca12g05779 488 MobiDBLite consensus disorder prediction 267 292 - -
Seca12g05779 488 Coils Coil 129 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05779 Seca-Chr12 149409682 149413270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05779 1 488 HSF AT4G13980 56.364 8.73e-178 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca12g05779 HSF_DNA-bind 3.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05779 K09419 - gmx:100816484 818.15