LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g05771	ATGGGACAAATCCCACCAAGGTGGAAAGGTGTTTGTCAAGTGGGAGAGCACTTCAACTCCACCAATTGCAACAAGAAGATAATAGGTGCTAGATGGTTCATGAAAGGAATAACTGATCACACCAAGAACCTCATCCATGGAAAAGACACTAAGGAATATCTTTCAGCTAGAGATGCTATTGGCCATGGCACTCATACAGCTTCAACAGCAGCTGGTTATTTTGTAGGAAATGCAAATTATAAAGGACTTGCTTCTGGTATAGCCAGAGGAGGAGCACCACTTGCTCACATAGCAATCTACAAGGCTTGCTGGGACATTTCTGTTGGAGATTGCACTGATGCTGATATACTGAAAGCTTTTGACAAGGCTATACATGATGGTGTAGATGTCTTAACTGTTTCTCTTGGCTTTGGCATTCCTTTGTTTTCCTATGTTGATCAACGTGACACAATAGCAATTGGTTCATTTCATGCAACTGCCAATGGAATCACAGTTGTTTGTTCAGCTGGAAATTCTGGTCCAGGGTCTCAAACCATTACAAACACTGCACCATGGATCATTACAGTTGCAGCTACCACAATAGATAGAGCCTTTCTAGCAGCCATTACCCTTGGAAATAACAACACTGTGTGGGGACAGTCCATTGATACTGGAAAACATAATCTTGGATATGTTGATCTCACATACTCTGAACGCATTGCTCTAGACCCATCAGATGATTTAGCCAAGGATTGTCAGTCTGGAAGTTTGAATGAAACAATGGCAGCAGGAAAAATTGTGTTATGCTTTTCAGTATCAGATCAACAGGATATTGTTTCAGCATCCCTTGCAGTAAAGGAAGCTGGAGGAGTTGGACTAATATATGCACAATATCATGAAGATGGACTCAATAGTTGTGGTTTATTTCCATGTATCAAGGTGGATTATGAAGTGGGGACACAAATATTAACCTATATTAGAAGAGCAAGGTTTCCAACTGCAAGACTAAGTTTTCCAAAGACTGTTGTTGGAAAATGGATATCTCCAAGAGTTGCATCTTTCTCATCTAGAGGACCTAGTACCATGTCTCCAACTGTTCTAAAGCCTGACATAGCTGCACCAGGTGTGGACATTTTGGCAGCATTTCCACCAGATGGCACTACAAAGAGCAGTGGATTTACATTCTTATCTGGAACTTCAATGTCTTGTCCTCATGTGGCTGGAATAGCAGCTCTCATCAAATCTAAACACCCAACTTGGTCACCTGCAGCCATAAGATCAGCTTTAGTAACAACAGCCTCCCAAACTGGCAATGATGGAAGCTTTATATCTGAAGAGGGTTCCACACTAAAGGCAGCAGATCCATTTGATATTGGGGGTGGTCATGTGAACCCCCACAAAGCAATGGATCCAGGACTCATATATAATACCACCACTGAGGACTATATTCAGTTCTTATGTTCCATGGGTCACAGTAGTGTTTCCATTAGCAAAGTGACCATGACCACTACAAGTTGTAAGAAAGGAAAACGCCAAGCACTGAACCTTAATCTTCCTTCCATATCAATTCCAACCCTGAAGAGGGCTGCAACAGTGATGAGAACAGTGACAAATGTGGGAAACATAACTGCAGTCTACAGAGCTATAGTGAAGAGTCCATATGGCATAAAAGTGAGAGTTGAACCTCAAATTTTGAGTTTCAATTCAGAGACCAGAGTCCTTACCTTCAATGTGAGTTTCCTGTCAACTAAAAAGTTGCATGGAGATTACAAATTTGGAAGCCTAACATGGACGGATGGCAAGCATTTTGTGAGGACCCCAATAGCTGTGAGGACCATATTTACATTTTGA	1830	0.4164	MGQIPPRWKGVCQVGEHFNSTNCNKKIIGARWFMKGITDHTKNLIHGKDTKEYLSARDAIGHGTHTASTAAGYFVGNANYKGLASGIARGGAPLAHIAIYKACWDISVGDCTDADILKAFDKAIHDGVDVLTVSLGFGIPLFSYVDQRDTIAIGSFHATANGITVVCSAGNSGPGSQTITNTAPWIITVAATTIDRAFLAAITLGNNNTVWGQSIDTGKHNLGYVDLTYSERIALDPSDDLAKDCQSGSLNETMAAGKIVLCFSVSDQQDIVSASLAVKEAGGVGLIYAQYHEDGLNSCGLFPCIKVDYEVGTQILTYIRRARFPTARLSFPKTVVGKWISPRVASFSSRGPSTMSPTVLKPDIAAPGVDILAAFPPDGTTKSSGFTFLSGTSMSCPHVAGIAALIKSKHPTWSPAAIRSALVTTASQTGNDGSFISEEGSTLKAADPFDIGGGHVNPHKAMDPGLIYNTTTEDYIQFLCSMGHSSVSISKVTMTTTSCKKGKRQALNLNLPSISIPTLKRAATVMRTVTNVGNITAVYRAIVKSPYGIKVRVEPQILSFNSETRVLTFNVSFLSTKKLHGDYKFGSLTWTDGKHFVRTPIAVRTIFTF.	610

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g05771	609	ProSiteProfiles	Serine proteases, subtilase domain profile.	1	462	-	-
	Seca12g05771	609	Gene3D	-	195	336	-	-
	Seca12g05771	609	FunFam	Subtilisin-like protease SBT1.5	1	204	-	-
	Seca12g05771	609	Pfam	Subtilase family	48	430	IPR000209	GO:0006508\|GO:0008236
	Seca12g05771	609	PRINTS	Subtilisin serine protease family (S8) signature	390	406	IPR015500	-
	Seca12g05771	609	PRINTS	Subtilisin serine protease family (S8) signature	58	71	IPR015500	-
	Seca12g05771	609	ProSitePatterns	Serine proteases, subtilase family, serine active site.	391	401	IPR023828	-
	Seca12g05771	609	CDD	Peptidases_S8_3	1	427	IPR034197	-
	Seca12g05771	609	CDD	PA_subtilisin_like	202	329	-	-
	Seca12g05771	609	Gene3D	-	479	606	-	-
	Seca12g05771	609	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	1	603	IPR045051	-
	Seca12g05771	609	Pfam	Fibronectin type-III domain	508	603	IPR041469	-
	Seca12g05771	609	Gene3D	Peptidase S8/S53 domain	1	475	IPR036852	GO:0004252\|GO:0006508
	Seca12g05771	609	FunFam	Subtilisin-like protease SBT1.5	479	606	-	-
	Seca12g05771	609	FunFam	subtilisin-like protease SBT1.5	195	336	-	-
	Seca12g05771	609	SUPERFAMILY	Subtilisin-like	19	466	IPR036852	GO:0004252\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g05771	Seca-Chr12	149339302	149343285	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g05771	1	605	Subtilisin-like Serine Gene Family	AT1G32960	50.980	0.0	591

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g05771	-		-	gmx:100792709	1087.02