Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05751 ATGAACAGTGTCTTACGTTGTCCACATGGGTGCGGGCCCTTCGTTTTCTACAGTGTTGTTCCAAACCAGTGTACCACTCCACTACTACTCTCACACCCTCTTCTTGGTATCCTTCTTTCTCTAAAAACTTCTGTGTTTATCCTACTCTTCCAACTCTTCTTCTTCTTGTTATTATTCTGCTTCCATTTCATCAAAGTTTTAGTTTTTCTAGCCTCCCCCAACCTTCTTCTTGCCCTGCTTTTTTTCTACTTGGCTGACTTCTACCTTTGTTTCATTGACTTTTTAGTCTTGGCAATGGATAACCAAGATCAAAGAAGAACCCACACTCCAGGGCACGAGAGTCATGGAGTTCATGTATGTCACAAATGTGGATGGCCCTTTCCGAATCCACATCCAAGTGCCAAACATAGGCGTGCTCACAAGAAGATCTGTGGAACCATTGAAGGTTACAAACTGTGTGTCTCTGAGGGAGAAACTCATTTGCACGGTTCAGATGATGAACATGTTTCTGATGATGATCACAAAACACCAGGTTTGGTTGTGTTAGGTTCAAACGCCTTGGACACAGGCAACAATGAGAAGGGTAATGATGGGAATGGAGAAAAATTAATTAGATCAGAAGATGAGGTGTTTTCAGATGCAGTTGCAGACTTTTTGGATAGTGGACTAAGTCCAGGAAATAAGGAACCTTTGCAAAAAGATAGTTTGGATACAGGTACTGATGTGGAAAAAGTGGACACTAAAGAACAAAATTGTTCAGGGTCTTCGGAGCACAATGATTTTAATGCTGCAGATGAGAGTCAGTTAATTGTGAAGTCAAGCAATGACTGCCAAATTGAAAATCCTAAACTTTTGCAATGTGAAAGTGTTGGACTGGGAAACACAGTGGAGTTGCAAGGTCAATTGTCAGGCTCTGCTGTGGATCCATTAGCAAGTTCAGTTGCAGATTTGAGGACTGAAGAATTGACTATTGTGCGTGGTGATGTTCATTTAGGTTTGTCAAGAGACTCCCATCCCAGCAAAGCTGAAGCCATGCCAGATGTATTGCCTGAGAAAAATGTCTATGCTGGTGAAAATGTGACAAATTGCAATTTGATATATGTTGTAAAGGAGACTAATTTGAAAGAAAAAGATGAGATAATATCAGAAAGAAATGTGGTTGAAATTGTGGACTCATCTGATAATGTTGTAGGTGAAACATGTGAAGGAGTGTCTGCAACAACAGTTAATGATGCAGTTTCCTTGGATCATCAAGTGGGTAATGGAGCTGTTGATCTAAAGGAAAAGAACAGTGCTGAGTTCCATTCTTTGCTAGCCCAAGATGACTTTCCTCTTGATTTAAACTCATCTGTAATAACAAATGATGCACAGGCAGAATCTGCTCATGTGATGCAATTTGCTACTTCTAGTGATGTCAAAATTTTGCAGGAAATACATGATGATACACCTGATGTAACACATCCTCAAGGTGAGTATGAAGATTTTAAAAATCAGGAAGGAGTGGTCTCCCAAGATCCTTTAAGCCTACACTCGCCTGGGTCATTGAATCACGTGGAAGATGAATCAAAGGATCCAGTTGCTGAGGAAAATAATTTTAATTTCAACACAAACCAATTGAATGAAAAAAGTGCTGTCCTCTCTTCAGATATGCATGGTATGGATAGTGGCATGAAGACAGAGCAGGTCAACAGTGAGTCTATGACTGAAGACAAGCATGCTGAAGATTGCACTGAAGTTTCTCCAGTCAAGCTCACAGTTGAAAGTTATCAAAGATCACATGAAATTGGAGCATCTATGAATGCTTTGAAAAATGAGATGAATGAGAATCATATGGTCCATTTCTCCGAAGAGCAGGGACCTGATGGTACTTGTGAAATTACACAACAGATAAGTTTACCTGAAGATAGTTTAATGGCCTCCTCTAATGAGAGTCAGAGGGATGCATCCGTTGGGTTTGCAATCAGTGAAACAAATAGTGAAATTAATATAGACAATACAAGCCATCATGAGAAAAACAGAACTGAAATAAATGATGTAGCAGTAGATGGCAAAGGTGTAGGAGCTGATGTGGAAAATGATACTGAAATTATATTGAAAGATCTTCAACCCAGTGACGTCTTGCAATTGGAAGTCAATCAATCAAGTGACTTATTGAAGAGTGATGTTGCTGGTGAAATGGGTAAAATTGAACAAGGTGATGTAACCGATGCTCAATGTAAAGAAAGAATCACTGAGAGAGATATTTCATCACCTAAATCTGCTAGCAGTCATTTTGAAAGCCCAGTTATTTTGGATGTTGTAATTGACGGGCCTGCAAGAAAGTCTAATGGTACAGAATGCACAAATATAGGTTCACTATCAGGTGCCCAGGAAAAAGATGAAATCAATAGCAATATCAAAATAAATGAAGAATATAGTAAACCTGAACCTGATGGTACTTCTGCCGACTCCCTTGAGGCACAAGATGCAGAACTATCAGTGAAGACTGCAGAAGACCTTGCCACGAAATATACATCAGTTTCTTCTTTAAATGCTGAGCCTTCTGCTCAACATGGTTCTGCTGTTGAAGATAATCCAGGTGGAGAGCCTGGTAGGGAAGTGTCTGGGATTATATCTGTGCCTGTTCAAGATCAAAGTGGTGGTAATAACTTGGTTAAACTTGGTTCATCTGGATTTGATGCTTCAGTTGACTCTGGTAGCCGGTGTGACAGTTTGGAGGGCAACTGGGGCTCTGTTTCAGTTCTTTCGATGCAATCCGATGCACCAGCTGTAGTTGATGCTGAAAATTTATCATCAACTAGTTTGCTGGCATCAACAGAAGCTGGGAAATCAAACTTGAACAACCCTGCATCTGAGAAACAGCAGTCTGGAAAATCAGAAATGTTTGAACCACCATCTTTCATGACATTGGTTGAATCTAGCCACGTGGTTAACCCTAAAGGTGCTTCCTCTGAAGTCCAGAGCCGACAACAGCCAAATTCCACTTCACAGGCTGATTGGTTTCCCACTCTAACTCAGGTTATGAATGAGTCACAAGGGAGGAAGAAGAATGAAGAAATAATAGCCAAGGTAACAAACTGGAGCACCAGTAAGGAACACACACCTCTGAAGAGCCTCTTGGGTGAGCCTATCCATAGCAACAACCCCAAATCTCCAAAAGTTGATGAAAATTCAGTGAATCCGAAGAACGGTAAAGTTTCAGAAAATAATGGTTCTGGATTGACAACTGTCAACTCCATTCTGGGTCCTGAATCCCCTACAGCTCAATTGGAGAAAGGAGATGCTGCAAAAGAATGGAACTCTCCAGCAAGATATCCTGCAGACATCAAGAGAGAAAAAAGGAAATTCAAGAGTAGACCATACTGGATACAATTGTTCAGAAATTCAATGCAATCCCTGAAGTCACACCCTGCTTTTTTATATTCTCTTTTGAATCACTTGTCTTCTAACTCTCCCAGATCCTTTCTCTCATCATTCTCCACTGGTTCTTTATCAACCCAAGGCCAATACTCAAAGGAAACCACTTCTCTAATTGATTACCTTAATGCCAACTTCAAATTCACAAAATGTCAATCCATCTATATCTCAAAACGTGTTTCAGGGGTCAGCACCCTTCAAAAGACCTTGTCAGTGTTGAATTTTTTCAAACAAATTGGATTTTCTGAAGCCCAGATTCAGTCCACGATTCGGCAGAGACCTCAAATACTGTTTTCACATGTTGATAAAACCCTGAGACCAAAAATTGAACTCCTTCAACTATTGGGTTTTGAGGGTTCTGAGTTATGCGAGTTTGTATCCGATGATTCAACCTTTTTGACTCTGAGTTTGAAGAACTCATTGGTTCCCTGTATAGAAGCTATTAGGAAAATTGTGCATGATGAGAAAGATTTTATTCAAGTTGTGCACAAATCTAGCCGCTGGATATTTCCAAAGTACCAAAGATTTGTGGAAAACATTAGCTTCTTAGAGAGTTGCGGCATTGTTGGGTCTCAGCTTTCAATGATACTCAAATATCAGCCAATACTTTTGACTAAAAAAAATGTTAGAGAGCGTGTTCTGAGTGTTATAGACATGGGTTTCCGTGAAAATTCAAGAATGTTGGTCCATGCACTCCTTACATTAAGTTGTTTGAGCTATAAAACATTTTGGGGAAAGCTGGAGCTAATTCAGCGTTTTGGGTTTTCTAAAGATGAGAGCCTGCAAATGTTCCAAAAGGTTCCACATTTGCCTAAAGTATCAGAGAAGAAATTAAAGGTTGGAATGGAATTCTTCTTGCATACAGTTATGCTGCCAAAGTCAACATTGGTTCGTCAGCCTAAGATTTTAATGTATAGCATAGAGGGCCGGGTGCTTCCACGATATAGAGTTTTTCAGCTCTTAATATCAAGAAATCTATGTAAGAAGGTCCCGAGTTATATTTATTTGTTATGTTTGTCTGAGACGAGGTTCATGAACAAGTTTATATCACAGTTCAGAGAAAATGCGGAGGCATTATTGGCAGCTTACAAGGGTCCCAAGGGTCAATATCTGAAAACATAA 4539 0.399 MNSVLRCPHGCGPFVFYSVVPNQCTTPLLLSHPLLGILLSLKTSVFILLFQLFFFLLLFCFHFIKVLVFLASPNLLLALLFFYLADFYLCFIDFLVLAMDNQDQRRTHTPGHESHGVHVCHKCGWPFPNPHPSAKHRRAHKKICGTIEGYKLCVSEGETHLHGSDDEHVSDDDHKTPGLVVLGSNALDTGNNEKGNDGNGEKLIRSEDEVFSDAVADFLDSGLSPGNKEPLQKDSLDTGTDVEKVDTKEQNCSGSSEHNDFNAADESQLIVKSSNDCQIENPKLLQCESVGLGNTVELQGQLSGSAVDPLASSVADLRTEELTIVRGDVHLGLSRDSHPSKAEAMPDVLPEKNVYAGENVTNCNLIYVVKETNLKEKDEIISERNVVEIVDSSDNVVGETCEGVSATTVNDAVSLDHQVGNGAVDLKEKNSAEFHSLLAQDDFPLDLNSSVITNDAQAESAHVMQFATSSDVKILQEIHDDTPDVTHPQGEYEDFKNQEGVVSQDPLSLHSPGSLNHVEDESKDPVAEENNFNFNTNQLNEKSAVLSSDMHGMDSGMKTEQVNSESMTEDKHAEDCTEVSPVKLTVESYQRSHEIGASMNALKNEMNENHMVHFSEEQGPDGTCEITQQISLPEDSLMASSNESQRDASVGFAISETNSEINIDNTSHHEKNRTEINDVAVDGKGVGADVENDTEIILKDLQPSDVLQLEVNQSSDLLKSDVAGEMGKIEQGDVTDAQCKERITERDISSPKSASSHFESPVILDVVIDGPARKSNGTECTNIGSLSGAQEKDEINSNIKINEEYSKPEPDGTSADSLEAQDAELSVKTAEDLATKYTSVSSLNAEPSAQHGSAVEDNPGGEPGREVSGIISVPVQDQSGGNNLVKLGSSGFDASVDSGSRCDSLEGNWGSVSVLSMQSDAPAVVDAENLSSTSLLASTEAGKSNLNNPASEKQQSGKSEMFEPPSFMTLVESSHVVNPKGASSEVQSRQQPNSTSQADWFPTLTQVMNESQGRKKNEEIIAKVTNWSTSKEHTPLKSLLGEPIHSNNPKSPKVDENSVNPKNGKVSENNGSGLTTVNSILGPESPTAQLEKGDAAKEWNSPARYPADIKREKRKFKSRPYWIQLFRNSMQSLKSHPAFLYSLLNHLSSNSPRSFLSSFSTGSLSTQGQYSKETTSLIDYLNANFKFTKCQSIYISKRVSGVSTLQKTLSVLNFFKQIGFSEAQIQSTIRQRPQILFSHVDKTLRPKIELLQLLGFEGSELCEFVSDDSTFLTLSLKNSLVPCIEAIRKIVHDEKDFIQVVHKSSRWIFPKYQRFVENISFLESCGIVGSQLSMILKYQPILLTKKNVRERVLSVIDMGFRENSRMLVHALLTLSCLSYKTFWGKLELIQRFGFSKDESLQMFQKVPHLPKVSEKKLKVGMEFFLHTVMLPKSTLVRQPKILMYSIEGRVLPRYRVFQLLISRNLCKKVPSYIYLLCLSETRFMNKFISQFRENAEALLAAYKGPKGQYLKT. 1513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05751 1512 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Seca12g05751 1512 MobiDBLite consensus disorder prediction 221 264 - -
Seca12g05751 1512 Gene3D Transcription termination factor 3, mitochondrial 1292 1495 IPR038538 -
Seca12g05751 1512 MobiDBLite consensus disorder prediction 234 253 - -
Seca12g05751 1512 Pfam mTERF 1313 1483 IPR003690 GO:0003690|GO:0006355
Seca12g05751 1512 Pfam mTERF 1212 1363 IPR003690 GO:0003690|GO:0006355
Seca12g05751 1512 SMART mt_12 1432 1464 IPR003690 GO:0003690|GO:0006355
Seca12g05751 1512 SMART mt_12 1400 1431 IPR003690 GO:0003690|GO:0006355
Seca12g05751 1512 SMART mt_12 1364 1395 IPR003690 GO:0003690|GO:0006355
Seca12g05751 1512 SMART mt_12 1226 1257 IPR003690 GO:0003690|GO:0006355
Seca12g05751 1512 SMART mt_12 1298 1328 IPR003690 GO:0003690|GO:0006355
Seca12g05751 1512 SMART mt_12 1262 1293 IPR003690 GO:0003690|GO:0006355
Seca12g05751 1512 SMART mt_12 1333 1361 IPR003690 GO:0003690|GO:0006355
Seca12g05751 1512 MobiDBLite consensus disorder prediction 775 795 - -
Seca12g05751 1512 MobiDBLite consensus disorder prediction 1050 1085 - -
Seca12g05751 1512 PANTHER PENTATRICOPEPTIDE REPEAT (PPR) SUPERFAMILY PROTEIN 99 1125 - -
Seca12g05751 1512 MobiDBLite consensus disorder prediction 774 795 - -
Seca12g05751 1512 FunFam Mitochondrial transcription termination factor-like 1276 1495 - -
Seca12g05751 1512 MobiDBLite consensus disorder prediction 976 1002 - -
Seca12g05751 1512 MobiDBLite consensus disorder prediction 940 961 - -
Seca12g05751 1512 MobiDBLite consensus disorder prediction 501 520 - -
Seca12g05751 1512 MobiDBLite consensus disorder prediction 1032 1099 - -
Seca12g05751 1512 MobiDBLite consensus disorder prediction 841 868 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05751 Seca-Chr12 149153555 149163771 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca12g05751 mTERF 6.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05751 - - gmx:102665569 1249.57