Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05750 ATGCAATCCCTGAAGTTACACCCTGCTTTTTTATGTTCTCTTTTGAATCACTTGTCTTCTAACTCTGCCAGACCCTTTCTCTCATCATTCTCCACTGGTTCTTTATCAACCCAAGGCCAATGCTCAAAGGAAACTACTTCTCTAATTGATTACCTTAATGCCAACTTCAAATTCACAGAATCTCAATCCATCTTTATCTCAAAACGTATTTCAAGGAACAGCACCCTTCAAAAGACCTTGTCTGTGCTGAATTTTTTCAAACAAATTGGATTGTCTGAAGCCCAGATTCAGACCATGATTCCTCAGAACCCTCAAATACTATTTTCTGATATTGATAAAACCCTGAGACCAAAAATTGAGTTCTTTCAACTATTGGGTTTTGAGGGTTCTGAGTTATGCAAGTTTATATCCAAGAATTCAAGTGTTTTGAATGCTAGTTTGGAAAAAACATTGGTCCCCTCTGTGTAA 468 0.3718 MQSLKLHPAFLCSLLNHLSSNSARPFLSSFSTGSLSTQGQCSKETTSLIDYLNANFKFTESQSIFISKRISRNSTLQKTLSVLNFFKQIGLSEAQIQTMIPQNPQILFSDIDKTLRPKIEFFQLLGFEGSELCKFISKNSSVLNASLEKTLVPSV. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05750 155 SMART mt_12 97 128 IPR003690 GO:0003690|GO:0006355
Seca12g05750 155 Pfam mTERF 83 151 IPR003690 GO:0003690|GO:0006355
Seca12g05750 155 Gene3D Transcription termination factor 3, mitochondrial 41 155 IPR038538 -
Seca12g05750 155 PANTHER CGI-12 PROTEIN-RELATED 41 155 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05750 Seca-Chr12 149145603 149146070 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca12g05750 mTERF 2.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05750 K15032 - gmx:102661687 176.792