Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05749 ATGTGCAATGAGAAACATTTTATTCAAGTTTTGCACAAATCTGGTGGCTGGATTCTCCCAAGGTACCAAAAATTTCTGCGCAACATTTCCTTCTTAGAGAGTTGTGGCATTGTTGGGTCTCAGGTTGCAATGCTACTCAAACGACAGTCAAGAATTTTGACTGCATCACAATCTTCTCTTAGAAACCATGTTTCGCGTGCTGTAGACTTGGGTTTCCATGAAAATTCAAGAATGTTGGTCCATGCGCTCTATATGATTAGTTCTTTGAGCTATAAAACATTCAGGAGAAAGCTGGAGCTAATTCAGTACTTTGGGTTTTCCAAAGATGAGAGCCTGACAATGTTCCAAAAGGCTCCATATTTGGGTGGGGTATCGGAGAAGAAATTAAAGGTTGGAATGGAATTCTTCTTGCATACAGTTATGCTGCCAAAGTCAGCGTTGGTTCATCAGCCTAAGTTTTTAATGTATAGCATGGAGGGTCGGGTGGTTCCCCGATATAGAGTTTTTCAGCTCGTAATATCAAGAAATCTATGTAAGAAGGCCCCCAGTTATATTTATTTGTTAAGTTTGTCTGAGGAGGTGTTCTTGGACAAGTATATATCACAGTTCAGAGAAAACGCGGAGGCATTATTGGTAGCTTACAAAGGTCACAAGGGTCATTATCTGAAAGCATAA 675 0.4015 MCNEKHFIQVLHKSGGWILPRYQKFLRNISFLESCGIVGSQVAMLLKRQSRILTASQSSLRNHVSRAVDLGFHENSRMLVHALYMISSLSYKTFRRKLELIQYFGFSKDESLTMFQKAPYLGGVSEKKLKVGMEFFLHTVMLPKSALVHQPKFLMYSMEGRVVPRYRVFQLVISRNLCKKAPSYIYLLSLSEEVFLDKYISQFRENAEALLVAYKGHKGHYLKA. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05749 224 SMART mt_12 8 38 IPR003690 GO:0003690|GO:0006355
Seca12g05749 224 SMART mt_12 43 73 IPR003690 GO:0003690|GO:0006355
Seca12g05749 224 SMART mt_12 112 143 IPR003690 GO:0003690|GO:0006355
Seca12g05749 224 SMART mt_12 144 176 IPR003690 GO:0003690|GO:0006355
Seca12g05749 224 SMART mt_12 77 107 IPR003690 GO:0003690|GO:0006355
Seca12g05749 224 Gene3D Transcription termination factor 3, mitochondrial 2 207 IPR038538 -
Seca12g05749 224 PANTHER CGI-12 PROTEIN-RELATED 22 202 IPR003690 GO:0003690|GO:0006355
Seca12g05749 224 Pfam mTERF 23 101 IPR003690 GO:0003690|GO:0006355
Seca12g05749 224 Pfam mTERF 88 196 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05749 Seca-Chr12 149144913 149145587 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca12g05749 mTERF 2.8e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05749 K15032 - vvi:100268158 221.861