Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05746 ATGGATGACGATTTCGAGTTCCCAACTGCTGGCAACATGGAAATGCCAGAGGAGGAGGAAGATATGGTGAGTCCGATCCTCAAGGTTGGGGAGGAAAAGGAGATTGGGAAGAACGGGCTTAAGAAGAAGCTGATCAAGGAAGGTGAAGGGTGGGAGACTCCTAACACTGGAGACCAAGTTGAAGTTCATTATACCGGAACATTGCTGGATGGAACCCAATTTGATTCTAGCCGTGACAGGGGTACCCCTTTCAAATTCAAGCTTGGCCAAGGGCAAGTGATTAAGGGATGGGATGAAGGTATCAAAACCATGAAGAAGGGTGAAAATGCAATTTTCACAATACCCCCAGAATTGGTTTATGGAGAGTCTGGGTCTCCTCCCACTATTCCCCCAAATGCAACTCTTCAGTTTGATGTGGAGTTGCTGTCTTGGACAAGTGTGAAGGATATTTGCAAGGATGGAGGAATATTGAAAAACATAGTTACTGAAGGGGAGAAATGGGATAATCCTAAAGACTTGGATGAAGTACTTGTTAAGTATGAAGCACGGCTTGAAGATGGAACGCTCATTTCAAAATCTGATGGGGTGGAATTCACTGTGGAAGAAGGGTATTTCTGTCCTGCTTTGGCTAAGGCTGTGAAAACAATGAAGAAGGGAGAGAAAGTTCTCTTGAATGTGAAGCCACAATATGCATTTGGTGAGAGTGGAAGGCCAGCATCAGGAGATGAAGGTGCTGTACCTCCAAATGCTTCACTCCAAATAGACCTTGAGTTAGTCTCGTGGAAGACCGTATCTGACATTACCAAGGATAGGAAGGTTCTGAAGAAGACCTTGAAGGAAGGAGAAGGATATGAACGACCAAACGATGGAGCTGTGGTTCAAGTGAAACTTATTGGGAAGTTGCAAGATGGGACTGTTTTCCTTAAGAAAGGCTACGATGATGAACAGCCATTTGAGTTCAAAATTGATGAAGAGCAAGTAATTGATGGACTTGATAGAGCTGTGAAGAATATGAAGAAAGGAGAAATTGCATTGGTGACCATACAGCCTGAATATGCTTTTGGTCCATCTGGGTCCCCTCAGGAATTGGCTACTATCCCTCCCAATTCCACTGTGTACTATGAAGTTGAGCTGCTTTCCTTTGTAAAGGAAAAAGAATCATGGGATCTGAATACACAAGAGAAGATTGAGGCAGCTGGAAAGAAAAAGGAAGAGGGGAATGCATTGTTCAAGGCTGGTAAATATGAAAGAGCATCAAAGAGATATGAAAAGGCCATAAGGTTTATTGAGTATGATTCATCCTTCAGCGATGAGGAGAAACAACAGACCAAGGCATTGAAAATCACATGCAACCTCAATAATGCAGCCTGTAAGTTGAAACTCAAGGACTACAAACAGGCAGAGAAGATGTGCACAAAGGTGTTAGAGCTTGATAGTAGGAATGTAAAAGCACTTTACCGGAGGGCTCAAGCATTTATCAATCTTGTGGACTTGGATCTGGCTGAGATGGATATTAAGAAAGCCATTGAGATTGAGCCAGACAATAGGGATGTGAAGATTGAGTACAAAATTTTGAAGGAGAAAGTGAGAGAATACAACAAGAAGGACGCACAGTTTTATGGCAGCATATTTGCAAAGATGAACAAACTAGAACAAGCAAGAACTGCAGCAGCAAAGCAGGAACCTGTGCCAATGACCATTGATAGCAAAGCTTAA 1716 0.4283 MDDDFEFPTAGNMEMPEEEEDMVSPILKVGEEKEIGKNGLKKKLIKEGEGWETPNTGDQVEVHYTGTLLDGTQFDSSRDRGTPFKFKLGQGQVIKGWDEGIKTMKKGENAIFTIPPELVYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGILKNIVTEGEKWDNPKDLDEVLVKYEARLEDGTLISKSDGVEFTVEEGYFCPALAKAVKTMKKGEKVLLNVKPQYAFGESGRPASGDEGAVPPNASLQIDLELVSWKTVSDITKDRKVLKKTLKEGEGYERPNDGAVVQVKLIGKLQDGTVFLKKGYDDEQPFEFKIDEEQVIDGLDRAVKNMKKGEIALVTIQPEYAFGPSGSPQELATIPPNSTVYYEVELLSFVKEKESWDLNTQEKIEAAGKKKEEGNALFKAGKYERASKRYEKAIRFIEYDSSFSDEEKQQTKALKITCNLNNAACKLKLKDYKQAEKMCTKVLELDSRNVKALYRRAQAFINLVDLDLAEMDIKKAIEIEPDNRDVKIEYKILKEKVREYNKKDAQFYGSIFAKMNKLEQARTAAAKQEPVPMTIDSKA. 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05746 571 SMART tpr_5 448 481 IPR019734 GO:0005515
Seca12g05746 571 SMART tpr_5 482 515 IPR019734 GO:0005515
Seca12g05746 571 SMART tpr_5 399 432 IPR019734 GO:0005515
Seca12g05746 571 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 153 265 - -
Seca12g05746 571 Coils Coil 515 535 - -
Seca12g05746 571 MobiDBLite consensus disorder prediction 1 20 - -
Seca12g05746 571 Gene3D Tetratricopeptide repeat domain 385 542 IPR011990 GO:0005515
Seca12g05746 571 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 57 145 IPR001179 GO:0003755
Seca12g05746 571 Gene3D - 32 147 IPR046357 GO:0003755
Seca12g05746 571 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 290 382 IPR001179 GO:0003755
Seca12g05746 571 FunFam Peptidylprolyl isomerase 263 384 - -
Seca12g05746 571 FunFam Peptidylprolyl isomerase 387 542 - -
Seca12g05746 571 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g05746 571 SUPERFAMILY FKBP-like 31 157 - -
Seca12g05746 571 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 173 262 IPR001179 GO:0003755
Seca12g05746 571 SUPERFAMILY FKBP-like 264 399 - -
Seca12g05746 571 FunFam Peptidylprolyl isomerase 149 262 - -
Seca12g05746 571 Pfam Tetratricopeptide repeat 483 515 IPR019734 GO:0005515
Seca12g05746 571 SUPERFAMILY TPR-like 388 548 IPR011990 GO:0005515
Seca12g05746 571 Gene3D - 263 384 IPR046357 GO:0003755
Seca12g05746 571 SUPERFAMILY FKBP-like 149 265 - -
Seca12g05746 571 ProSiteProfiles TPR repeat profile. 482 515 IPR019734 GO:0005515
Seca12g05746 571 Gene3D - 148 262 IPR046357 GO:0003755
Seca12g05746 571 FunFam Peptidylprolyl isomerase 30 148 - -
Seca12g05746 571 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 52 142 IPR001179 GO:0003755
Seca12g05746 571 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 284 379 IPR001179 GO:0003755
Seca12g05746 571 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 170 259 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05746 Seca-Chr12 149106776 149110569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05746 15 571 Calmodulin-binding Proteins AT5G48570 74.643 0.0 860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05746 K09571 - gmx:100810243 1036.17