Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05724 ATGATCAAGGGCTATTTTACAATGGATATAATGGAAGGCAAGAGGAAAGTAAAATTGCTAAAAGTGGTGTATATTCTTATAGGTGATGGTGGTAAACATTATCGTGAATTACTAGACCATGGTTATCCTGATGGAAATGAAAAGGCTTTGTCTTGGACAGATATGATGGAATCATGTAAGCCCTCATCTGCAGCCAAGTTACCCCAGAAAAATGTATACATGCCAGCTGGAAATGAAAATTCACCATCCTCTTCAAGAAGGGAGCCCGTTGTAAACCAGGAAAACTGCCGCTGGCTAAACTTCAATAATAATAATAATGCTGGAAACTCTGTTTTCTCGCTACCTCAATGCGTTGGTGGAGTCAAACATCCTCCATATTCTTCTATAGTAGAAACACAAGAAATTAGTTCTGACTACTATGCAACATTGTTTGACCAAAGCCAGATTGGAGCACCGCTGGATGCAGGTTCAAGCTTAACTGTAGCACAAAAACAGAAATTTACTATTAAGGCAGTCTCTCCAGAATGGGGTTATGCCTCTGAGACTACAAAGGTCTTCATTATTGGGTCTTTTCTCTGTCATCCCTCGGATTCTACCTGGGCCTGTATGCTTGGTGATGTTGAAGTTCCTGTTGAGATAATTCAGGATGGTGTAATTTGTTGTGAAGCTCCATCTCACCTTCCTGGAAAGGTTACTCTGTGCATTACTTCTGGAAACCGGGAGTCCTGCAGTGAAGTCAGAGAGTTTGAGTATCGCAACAAGGCCACCAGTTACACCCGCAGTACTCCATTGGAAACAGAAACCACAAGAAGTCCAGATGAGCTCTTATTACTTGTTAGATTTGGCCAGATGCTCCTTTCTCCATCAACTATAAAGAATGACAACATAGAATCTGGAGTTCCTCTCATAAAACAGAAAGCTGATGATGATTCATGGAGCCATATTATAGAGGCTCTTCTAGTTGGTAGTGGAACTTCATCTAGTACTATAGATTGGCTTCTTGAAGAGCTTCTAAAGGATAAGCTGCAAATGTGGCTTTCTTGCAAATCCCAGCAAGTAGATGAAGAGACAGGCTGTTCTTTGTCCAAGAAGGAGCAGGGGATTATTCACATGGTTGCTGGGTTGGGTTTTGAGTGGGCCTTGAACCCTATTCTCAGTTGTGGTGTGAATATCAATTTCCGTGACATCAATGGGTGGACTGCCCTTCATTGGGCTGCACGTTTTGGAAGGGAAAAAATGGTTGCTTTGCTTATAGCTTCTGGTGCATCTGCTGGAGCTGTGACAGATCCAAGTGCACAAGATCCAATTGGTAAAACTGCTGCATCGATTGCAGCCAGCAATGGGCATAAGGGTCTAGCAGGTTATCTTTCAGAGGTAGCTCTAACAAGCCATCTATCTTCGCTTACACTGGAAGAGAGTGAGCTATCAAAAAGTTCAGCTGAGCTTCAAGCAGATTTAACTGTTAGTAATGTCTCCAAGGAAAATATCGCCGCCAGTGAGGATCATGCTTCACTCAAAGATACCTTGGCTGCTGTCAGAAATGTAACTCAGGCAGCTGCACGGATACAGGCTGCTTTTCGATCACATTCTTTTAGAAAACGGAGAGCAAGAGAAGCAGTTGCTGCTGGTATAGACGGATATGGTATCAGTGCAGGTAGCATTGGTAACATTCCAGAGCTTTCTGCTATGTCAAAACTTGCATTTCGGAACTCACGTGAGTATCATTCAGCTGCCTTATCAATTCAGAAGAAATATCGAGGTTGGAAAGGTCGCAAAGATTTCTTAGCATTGCGCCAAAAAGTAGTGAAGATACAGGCTCATGTGAGGGGTTACCAGGTTAGGAAGCATTACAAGGTATTATGGGCGGTTGGAATCTTGGACAAGGTTGTGCTACGGTGGCGGAGAAAAGGAGCTGGTTTACGAGGCTTCCGACAAGAGATGGAGATTAATGAAAATGAAGATGAAGATATTCTCAAGATCTTCAGAAAACAGAAAGTTGATGTAGAAATTGAGGAAGCTGTTTCACGGGTGCTATCCATGGTCGACTCTCCAGATGCTCGTCAGCAATATCAACGCATGCTTGAGAAGTTTCGTCAAGCCAAGGCTGAACTTGCCGGGACGAGTGAAGAAACATCATTATCAACCTCTGTAGGGGATACTTTCAAAATGGAATCTCTAGGGAATACTTTCAATATGGAAGATGATTTTTATCAATAG 2217 0.4272 MIKGYFTMDIMEGKRKVKLLKVVYILIGDGGKHYRELLDHGYPDGNEKALSWTDMMESCKPSSAAKLPQKNVYMPAGNENSPSSSRREPVVNQENCRWLNFNNNNNAGNSVFSLPQCVGGVKHPPYSSIVETQEISSDYYATLFDQSQIGAPLDAGSSLTVAQKQKFTIKAVSPEWGYASETTKVFIIGSFLCHPSDSTWACMLGDVEVPVEIIQDGVICCEAPSHLPGKVTLCITSGNRESCSEVREFEYRNKATSYTRSTPLETETTRSPDELLLLVRFGQMLLSPSTIKNDNIESGVPLIKQKADDDSWSHIIEALLVGSGTSSSTIDWLLEELLKDKLQMWLSCKSQQVDEETGCSLSKKEQGIIHMVAGLGFEWALNPILSCGVNINFRDINGWTALHWAARFGREKMVALLIASGASAGAVTDPSAQDPIGKTAASIAASNGHKGLAGYLSEVALTSHLSSLTLEESELSKSSAELQADLTVSNVSKENIAASEDHASLKDTLAAVRNVTQAAARIQAAFRSHSFRKRRAREAVAAGIDGYGISAGSIGNIPELSAMSKLAFRNSREYHSAALSIQKKYRGWKGRKDFLALRQKVVKIQAHVRGYQVRKHYKVLWAVGILDKVVLRWRRKGAGLRGFRQEMEINENEDEDILKIFRKQKVDVEIEEAVSRVLSMVDSPDARQQYQRMLEKFRQAKAELAGTSEETSLSTSVGDTFKMESLGNTFNMEDDFYQ. 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05724 738 CDD IPT 168 252 - -
Seca12g05724 738 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 133 703 - -
Seca12g05724 738 ProSiteProfiles Ankyrin repeat profile. 397 429 IPR002110 GO:0005515
Seca12g05724 738 ProSiteProfiles Ankyrin repeat region circular profile. 397 423 - -
Seca12g05724 738 SMART ANK_2a 436 465 IPR002110 GO:0005515
Seca12g05724 738 SMART ANK_2a 397 426 IPR002110 GO:0005515
Seca12g05724 738 ProSiteProfiles IQ motif profile. 574 603 IPR000048 GO:0005515
Seca12g05724 738 FunFam Calmodulin-binding transcription activator 2 573 621 - -
Seca12g05724 738 Pfam IQ calmodulin-binding motif 575 594 IPR000048 GO:0005515
Seca12g05724 738 Pfam IQ calmodulin-binding motif 599 618 IPR000048 GO:0005515
Seca12g05724 738 SUPERFAMILY E set domains 168 252 IPR014756 -
Seca12g05724 738 ProSiteProfiles IQ motif profile. 597 622 IPR000048 GO:0005515
Seca12g05724 738 SMART iq_5 514 536 IPR000048 GO:0005515
Seca12g05724 738 SMART iq_5 596 618 IPR000048 GO:0005515
Seca12g05724 738 SMART iq_5 573 595 IPR000048 GO:0005515
Seca12g05724 738 ProSiteProfiles IQ motif profile. 516 543 IPR000048 GO:0005515
Seca12g05724 738 Coils Coil 690 710 - -
Seca12g05724 738 FunFam Calmodulin-binding transcription activator 4 isoform A 279 462 - -
Seca12g05724 738 FunFam Calmodulin-binding transcription activator 2 162 256 - -
Seca12g05724 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 621 IPR027417 -
Seca12g05724 738 Pfam IPT/TIG domain 168 251 IPR002909 -
Seca12g05724 738 Pfam Ankyrin repeats (3 copies) 379 457 IPR002110 GO:0005515
Seca12g05724 738 Gene3D - 291 462 IPR036770 -
Seca12g05724 738 Gene3D - 573 622 - -
Seca12g05724 738 SUPERFAMILY Ankyrin repeat 366 458 IPR036770 -
Seca12g05724 738 Gene3D Immunoglobulins 162 257 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05724 Seca-Chr12 148925731 148935531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05724 51 707 CAMTA Transcription Factor Family AT1G67310 59.760 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05724 K21596 - gmx:100786880 1086.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05724 12 148925731 148935531 Seca12g05724 12 148925731 148935531 ECH
Seca6g01632 6 69613178 69622957 Seca12g05724 12 148925731 148935531 PCT