Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05722 ATGAGTTTGTTCCATGTAGTTGGGTTTAGTCTAAAAGTGGGGCATCTTCTTTTGGTGCTATGTTGCTGGGTTGTGTCTGTCGTTTACCTTAACCGGTTCATTAGCAGTGGAATTACTGATACCAAGATAGGTTTTCTGGGTGATGGTAGCAAGATGTGGCTCAAATGGTGGGAGAAGATCTCAGGGCATGATTACAAAATCCATCAACAGTACTACCAGTATATTTGGTCCAAGAAAGTGAAGAAAGCATTGTGGAGAAAGCTTTTACTGACATGGGTAGTGGGTTGGACTATAGTATCTTTGTGGATCTTCTTCTGCATGAGCTTACAAGCTACTGAGAAGAGGAAAGAAACACTGGCAAGCATGTGTGATGAAAGGGCTAGGATGCTGCAGGATCAGTTTAATGTGAGTATGAACCATATCCAAGCTATGTCCATTCTGATCTCAACCTTCCACCATGCCAAGAACCCCTCAGCCATCGATCAGAGAACTTTTGCCAGGTACACAGAAAGAACAGCTTTTGAGAGGCCTCTTACAAGTGGTGTTGCATATGCTGTAAGGGTTCTTCATTCTGAAAGGGAACAATTTGAAAAGCAACAAGGATGGACTATTAAGAGGATGGATACTCTGGAGCAGAACCCAGTTCATAAGGACGATTATGCCCCAGAGGCATTGGAGCCATCCCCCATTCAGGAAGAATATGCTCCTGTCATATTTGCACAGGATACAATTTCACATGTGATTTCTGTTGACATGCTTTCTGGAAAGGAAGACCGTGGAAATGTGTTGCGTGCAAGAGAATCAGGCAAAGGGGTTTTAACTGCGCCCTTTAGGCTGCTCAAAACAAATAGTCTAGGGGTTATCCTGACATTTGCTGTCTACAAGAGAGATTTTCCATCAAATGCAACCCCAAATGAAAGGATTCAAGCAACTGATGGGTATCTTGGTGGGGTCTTTCATGTTGAGTCATTAGTGGAAAAATTACTTCAGCAACTTGCTAGCAAGCAAACTGTAATTGTCAATGTGTATGATACTACAAATCAAACCCATCCAATTGCCATGTACGGCTCAAATCTATCAGGGGATGTGTTCTATCATGTCAGCACTCTTAACTTTGGAGACCCTTTCAGGAAACATGAGATGCACTGCAGGTTCAAACAGAAACCGCCGTGGCCATGGCTGGCAATAACTACTTCAATTGGCATCCTTGTTATTGCACTCCTTGTTGGACATATTTTCCATGCTACTGTGAATCGAATTGCAAAAGTAGAAGATGATTACCGTGAGATGATGGAGCTGAAAAAACGAGCTGAGGCAGCTGATGTTGCAAAATCACAGTTTCTCGCTACTGTTTCCCATGAGATCAGAACACCAATGAATGGTGTTTTAGGGATGTTGCATATGCTTATGGATACAGATCTAGATGTAACCCAACAGGAATATGTCAGAACGGCACAGGAAAGTGGAAAAGCTCTGGTGTCGCTTATAAATGAGGTTTTGGACCAGGCAAAGATTGAATTTGGTAAGCTAGAGCTTGAGGCAGTGCTCTTTGACATACGGGCTATTTTGGATGATGTATTGTCACTATTTTCTGAGAAGTCTCAAGGAAAAGGAGTAGAGTTGGCAGTTTATGTGTCAGATCAGGTTCCTGAACTGCTAATAGGTGATCCAAGAAGGTTTCGACAAATAATTACAAATCTTGTGGGTAACTCAATTAAGTTCACAGACAAAGGACATATTTTTGTCACTATCCATCTTGTTGAGGAGGTTGTACATTCAATAGAGGTTGACAAAGAAAAAGAATCAAATTCAGATAATACCTTGAGTGGTTTCCCTGTTTCTGATAGTCGCCGGAGCTGGAAAGAATTCAAGGCTTTCAGTCAAGAAGGACCTCTTGGTTCTTTCTCATCCTCCTCCAATGATCTCATCAATTTGATTGTGTCTGTTGAGGATACAGGAGAAGGTATTCCTCTAGAAGCCCAGCCCCTCATCTTCACTCCATTCATGCAGGTAGGTTCATCCATCTCCAGAAAACATGGAGGAACAGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGTGAAATTGGATTTGTAAGCATACCCAAGATTGGATCCACTTTCACTTTTACTGCTGTCTTCACCAATGGACTCCCCAGTTCAAATGAGTGTAAAATTCAGCAAATCAGCAACCAACCTCAACCTGCCTCTTCAGCATTTGAGGGGATGACTGCATTGGTTATTGACCCAAGATCCGTTCGAGCAAAAGTGTCTAGATATCACATCCAACGGCTTGGCATTCATGTTGAAATTGTTTCAGATTTAAACCAAGGCTTGTCAACCATAAGCAATGGGAATATAGTTATCAATATGATCCTGATTGAACAGGAGGTCTGGGACAGAGATTCAGGCATGTCATCTCACTTTGTCAATAACGCAAGGAAAGTTGACAGTGGTGTTCCTCCACAGCTGTTTATTCTTGTTAATTCTAGTAGTTCTTTCAAAGCAAGTAGTGTAATCCCAGGTGTTAATAATCCTACTGTCATAACAAAACCTCTGAGAGCAAGCATGCTTGCTGCCTCACTGCAAAGAGCCATGGGTTTTACGAGCAAGGGCACTTCTTCAAATAGGGACCTCCAAAGCTTGTCTCTTCGCCAACTTCTTCTTGGGAGGAAGATTCTAATTGTAGATGACAATAGTGTGAACCTTGCAGTAGCTGCTGGTGCTTTGAAAAAATATGGAGCAGATGTGGTTTGTGTTAGCAGTGGGAAAGGTGCCATCTCTTCACTGAAGCCACCCCATCAGTTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGATGGGTATGCTACAGGAATTGTTGCTAATATACAATTCTTTTCCAACAGTTTTGAAGCTACAAAGAGAATTAGAGAGATGGAACATAATGTGAACAGAGAAGTGTCTATAGATGGCTTTGAGAATATTTCAAACTGGCATGTACCCATTTTAGCCATGACTGCAGATGTGATCCAGGCTACACATGAGGAATGCCTAAGGTGTGGCATGGATGGATATGTTTCAAAACCATTCGAAGCTGAACAGCTTTTTAGAGAAGTTTCTCGGTTTTTCCAGTCATCTTGA 3141 0.4206 MSLFHVVGFSLKVGHLLLVLCCWVVSVVYLNRFISSGITDTKIGFLGDGSKMWLKWWEKISGHDYKIHQQYYQYIWSKKVKKALWRKLLLTWVVGWTIVSLWIFFCMSLQATEKRKETLASMCDERARMLQDQFNVSMNHIQAMSILISTFHHAKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREQFEKQQGWTIKRMDTLEQNPVHKDDYAPEALEPSPIQEEYAPVIFAQDTISHVISVDMLSGKEDRGNVLRARESGKGVLTAPFRLLKTNSLGVILTFAVYKRDFPSNATPNERIQATDGYLGGVFHVESLVEKLLQQLASKQTVIVNVYDTTNQTHPIAMYGSNLSGDVFYHVSTLNFGDPFRKHEMHCRFKQKPPWPWLAITTSIGILVIALLVGHIFHATVNRIAKVEDDYREMMELKKRAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQESGKALVSLINEVLDQAKIEFGKLELEAVLFDIRAILDDVLSLFSEKSQGKGVELAVYVSDQVPELLIGDPRRFRQIITNLVGNSIKFTDKGHIFVTIHLVEEVVHSIEVDKEKESNSDNTLSGFPVSDSRRSWKEFKAFSQEGPLGSFSSSSNDLINLIVSVEDTGEGIPLEAQPLIFTPFMQVGSSISRKHGGTGIGLSISKCLVGLMNGEIGFVSIPKIGSTFTFTAVFTNGLPSSNECKIQQISNQPQPASSAFEGMTALVIDPRSVRAKVSRYHIQRLGIHVEIVSDLNQGLSTISNGNIVINMILIEQEVWDRDSGMSSHFVNNARKVDSGVPPQLFILVNSSSSFKASSVIPGVNNPTVITKPLRASMLAASLQRAMGFTSKGTSSNRDLQSLSLRQLLLGRKILIVDDNSVNLAVAAGALKKYGADVVCVSSGKGAISSLKPPHQFDACFMDIQMPEMDGYATGIVANIQFFSNSFEATKRIREMEHNVNREVSIDGFENISNWHVPILAMTADVIQATHEECLRCGMDGYVSKPFEAEQLFREVSRFFQSS. 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05722 1046 FunFam Histidine kinase 4 415 506 - -
Seca12g05722 1046 SMART HisKA_10 443 508 IPR003661 GO:0000155|GO:0007165
Seca12g05722 1046 SUPERFAMILY CheY-like 894 1043 IPR011006 -
Seca12g05722 1046 CDD HATPase_EvgS-ArcB-TorS-like 560 718 - -
Seca12g05722 1046 ProSiteProfiles Histidine kinase domain profile. 450 720 IPR005467 -
Seca12g05722 1046 Gene3D CHASE domain 160 389 IPR042240 -
Seca12g05722 1046 Gene3D - 507 720 IPR036890 -
Seca12g05722 1046 CDD HisKA 443 504 IPR003661 GO:0000155|GO:0007165
Seca12g05722 1046 FunFam Histidine kinase 4 160 389 - -
Seca12g05722 1046 Gene3D - 411 506 - -
Seca12g05722 1046 ProSiteProfiles CHASE domain profile. 156 382 IPR006189 -
Seca12g05722 1046 Pfam His Kinase A (phospho-acceptor) domain 443 506 IPR003661 GO:0000155|GO:0007165
Seca12g05722 1046 CDD REC_hyHK_CKI1_RcsC-like 897 1039 - -
Seca12g05722 1046 SMART REC_2 895 1039 IPR001789 GO:0000160
Seca12g05722 1046 CDD PRTases_typeI 846 924 IPR000836 -
Seca12g05722 1046 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 555 718 IPR003594 -
Seca12g05722 1046 PRINTS Bacterial sensor protein C-terminal signature 680 698 IPR004358 GO:0016310|GO:0016772
Seca12g05722 1046 PRINTS Bacterial sensor protein C-terminal signature 663 673 IPR004358 GO:0016310|GO:0016772
Seca12g05722 1046 PRINTS Bacterial sensor protein C-terminal signature 645 659 IPR004358 GO:0016310|GO:0016772
Seca12g05722 1046 ProSiteProfiles Response regulatory domain profile. 896 1043 IPR001789 GO:0000160
Seca12g05722 1046 SMART CHASE_2 156 357 IPR006189 -
Seca12g05722 1046 SMART HKATPase_4 555 720 IPR003594 -
Seca12g05722 1046 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 428 509 IPR036097 GO:0000155|GO:0007165
Seca12g05722 1046 Gene3D - 892 1046 - -
Seca12g05722 1046 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 497 715 IPR036890 -
Seca12g05722 1046 PANTHER TWO-COMPONENT HISTIDINE KINASE 97 1038 - -
Seca12g05722 1046 Gene3D - 107 159 - -
Seca12g05722 1046 ProSiteProfiles Response regulatory domain profile. 748 870 IPR001789 GO:0000160
Seca12g05722 1046 Pfam CHASE domain 159 355 IPR006189 -
Seca12g05722 1046 SUPERFAMILY CheY-like 744 871 IPR011006 -
Seca12g05722 1046 Pfam Response regulator receiver domain 897 956 IPR001789 GO:0000160
Seca12g05722 1046 Coils Coil 420 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05722 Seca-Chr12 148915047 148920742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05722 1 1045 Miscellaneous Gene Families AT1G27320 67.481 0.0 1400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca12g05722 CHASE 2.3e-36 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05722 K14489 - gmx:100776798 1773.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05722 12 148915047 148920742 Seca12g05722 12 148915047 148920742 ECH