Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05718 ATGGAGTGGAATGCAAAATCCACCTCACAATGGGACATGGAGTGCCTATTATTCTTCAATGCAAAAGCAACAGAAAATCCAAAATTACAACCACCAAACAGGAGTGAAGTGAACAGAGAAATCAATGTCAGGTTGTTTGATACATCTGGTGGCAGTGGTTGTTCTAGGTCTGAGCTAATAGATGCTTCTTCATCAAGGAGCTCAAAATCAGCTTCCATCAGTTCATCATCAAATAAGGATAGCAAAACATCAATAATTACTTTTGAAAGTTCCCAAGATGATTCCAGTGCTAAAAAAGAATTATCTAAAGAGGAGCCAGTTGAAACTTCTCATGCACCAGAGCTCACTCTAAAGCTTGGTAAAAGGTTGTACTTTGAGGATGTGTGTCCAGGAAGTGATTCCAGGAACCTATCTTTCTCTGGGGCTACCACTTTATCTTTAAATACTGGAAAGAAATGTAAGTCCAATGGTCAGAGCATACAATATCCACGGTGCCAGGTTGAAGACTGTGGCCTTGACCTTTCATCAGCTAAAGATTACCATCGCAAACATAGAGTTTGTGAAAGTCATTCCAAATCCCCTAAGGTGATTATAGCTGGTTTGGAACGTCGATTTTGCCAGCAATGTAGCAGGTTCCATGGACTGTTAGAGTTTGATGAAAAAAAGAGAAGCTGCAGACGACGTCTTTCAGATCACAATGCAAGGCGCCGTAAACCTCATCCTGAAGCTGTCCAATTAAGTCAATCAGCTTTGTCTTCCTCACAATGTGGTGGGAGGCAACAGACCAGTCCTTTCTCTTATTCCAGGACTGCTACAAATTTAGCCTGGCAAGATCTACATAGCAGCAAGCTTCCCCAGACAAAAGATTTTCTCTTGAAACCTGCAAAAGCCAATAATGAGATACCAAGTATTGTCACTATGCTTTCTGGTGATTCCAACGTCCCTTTTACATCCAAAGGTGTTGCAACCAAGGGTACTAGTCCAGATATAGAAGACTCCATCACCTCTTCTGATCCAAATGCTACACAAGATTTTCACCGTGCTCTCTCTCTTCTGTCAAACAATTCATGGGGTTCATATGAGACTAAATCCATTTCTCTAGAACACTCCAATCACACAACCCGTACCTCTCAGCCCATGATACATACAACGGGTCAGCGCTTTCCTCCTACTACATCTGAATATTGGCATAGTGATCAACAAGTGAATTGCGGCACATGGATCTCATACTCAAATTGTGATGATAGTAATCGCTTTCATGAATTTCAACTGTTCAGAGAACCTTATGAGTCTGGATTTCCTTATGACCAGTTGGATTAA 1320 0.4136 MEWNAKSTSQWDMECLLFFNAKATENPKLQPPNRSEVNREINVRLFDTSGGSGCSRSELIDASSSRSSKSASISSSSNKDSKTSIITFESSQDDSSAKKELSKEEPVETSHAPELTLKLGKRLYFEDVCPGSDSRNLSFSGATTLSLNTGKKCKSNGQSIQYPRCQVEDCGLDLSSAKDYHRKHRVCESHSKSPKVIIAGLERRFCQQCSRFHGLLEFDEKKRSCRRRLSDHNARRRKPHPEAVQLSQSALSSSQCGGRQQTSPFSYSRTATNLAWQDLHSSKLPQTKDFLLKPAKANNEIPSIVTMLSGDSNVPFTSKGVATKGTSPDIEDSITSSDPNATQDFHRALSLLSNNSWGSYETKSISLEHSNHTTRTSQPMIHTTGQRFPPTTSEYWHSDQQVNCGTWISYSNCDDSNRFHEFQLFREPYESGFPYDQLD. 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05718 439 ProSiteProfiles Zinc finger SBP-type profile. 162 239 IPR004333 GO:0003677
Seca12g05718 439 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 63 394 IPR044817 GO:0003677
Seca12g05718 439 MobiDBLite consensus disorder prediction 48 92 - -
Seca12g05718 439 FunFam Squamosa promoter-binding-like protein 14 156 226 - -
Seca12g05718 439 MobiDBLite consensus disorder prediction 93 111 - -
Seca12g05718 439 Pfam SBP domain 165 238 IPR004333 GO:0003677
Seca12g05718 439 MobiDBLite consensus disorder prediction 46 113 - -
Seca12g05718 439 Gene3D - 155 226 IPR036893 GO:0003677|GO:0005634
Seca12g05718 439 MobiDBLite consensus disorder prediction 245 265 - -
Seca12g05718 439 MobiDBLite consensus disorder prediction 229 265 - -
Seca12g05718 439 SUPERFAMILY SBT domain 163 244 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05718 Seca-Chr12 148865956 148870605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05718 1 399 SBP-box Gene Family AT5G43270 37.560 2.62e-58 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca12g05718 SBP 1.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05718 - - gmx:100796013 517.309