Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05716 ATGGATCTGGAAGTGGAAATTGAAAGATTTCTAACAAGGCTGCAATGGATGGAAGAAGAAAATAGTGAATCTGGTGATCGTGAACCGGGATCGAATAATTTTATAAAGATGGGTGATGATAGTATTGATTTAACTACACCAACCAAAGGTTTAAATGATCCAGTTGATACGTTGGAGGAATGGGTTCCAAAGTGTGATGAAGAAATCAAACCTGTAGTTGGCAAAGTCTTTGATACTTTAGAACAAGGAGGGGACTTTTATCAAAGGTATGCACATACTGCTGGTTTTAGTGTACGCAAAGCAACTGAAACAAAAGATAAAAATGGAGAAACAAAGTGGAAATATTTTCTTTGCTCTAAAGAAGGCTTCAAATTAGAAACAAAAGAAGGTGTAACTGAGTTGCTTGTTGATGATAAAAAATTGCCTAAAACCAGACGAAGAAAACTAACAAGGGAAGGGTGTAATGCAAGGATTGTTTTTAAGAGGACACAAGAAGGAAAATATGAAGTGGTGCGATTTCATGAAGGTCATACACATGCGTTAGCTACACCTAAAAAGAAGCAGTTCTTAAGATCTGCAAGGAGTATAAATAATGTTCATAAGAATTTATTACATTGTTATAATAGAGCTAATGTAGGCCCTTCAAAAGTGTATCAATTATTGAAAGAGCAGGTTGGGAGTTATGATAGTATAGGATGCACAAAGAGAGATCTCCAAAATTATTCTAGAGACTTGAAAGAGTTAATCAAAGACTCTGATGCACATATGTTTCTTGATAATTTTAGGAGAAAAAATGAGATGAACCACTCTTTTTATTATGACTATGAGGTTGATAATGAAGGGAGATTGAAATATGTGTTTTGGGCAGATGGTCTTTGTCGAAAAAATTACTCTTTGTTTGGTGATGTCATTTCATTTGATACAACATACAATACAAATAAATATTGTATGATTTTTGCACCATTCACTGGCATAAATCATCATAGGCAGAGCATAACTTTTGGGGCTGCCTTCCTAGCAGATGAGAAAGTTGAATCATTTGAGTGGTTGTTTGAAACATTTTTGAAAGCAATGGGAGGGCATAAACCTATTGTGATTATAACAGACCAGGACCCAGCCATGAAAATTGCAATTGAGAAGGTTTTCACAGGTTCTTCTCATAGATTTTGCATGTGGCACATACTGAAAAAACTTTCAGAGAAGGTGGGTGTTTCCTTGAATTCCAATGCTGATTTTAACAGTCGTTTTAAGACCTGTGTTTGGAATTCAGAGTCTCCAGATGAATTTGAATTGACTTGGAAAGCTATCATTATTGATTTCAAGTTAGAAGAAAATGGTTGGCTTTCACAAATGTATGACATGCGAAGTATGTGGATACCGGCTTATTTCAAAAGTATTTTTCTAGCTGGAATTTTGAGAACAACCTCAAGATCCGAGAGTGAAAATTCCTTCTTTGGTAATTACTTGAATAAGAACCTTAGTTTGGTGGAGTTTTGGATGAGATTTGATTCTGCACTAGAAGCACAGAGGCATAATGAATTACTTGCAGATAATGATACACTTCATTCTATGCCCGAATTGAAGATGCATAAGGATATAGAGAAACATGGCAGAGAAGTTTACACTCATCAAAATTTTTACATATTTCAAGGTGAGTTATGGAGTGCATGTGTGGATTGTGGGGTTGAAGAAACAAAAGAGGATAATGGGCAATTATTAATTTTTATACTTGAGCAGCTTGTGGTTAATGGCAACAAAGTGAGCAAACATCGGAAAGTTGTTTACAATCCTTCCAATCATATTGCACATTGTTCATGTAAAATGTTTGAATCTGAAGGCATGCCATGTCGACATATCCTTTTTGTATTAAAGGGTAAAGGCTTGAGTGAAATCCCAAGTTATTACATTATTAATAGATGGACCAAATTGGCAACTAGTACTCCAATTTTTTATTATGATGGCAATGTATTGGAGGCATGTTCCAAATTGGAAAGTGAAAGCAAGTTAATTTCTGATGCATGGGCAAAATTATTTAAATGCATGCATTTGGCTGGTACATGTAAAGATAAACTACTCCTTGTCATAAATGAAGCTTCTAGTATTGAAATGAAATTGACTAAGATGAAAGGTGATGTTGGAGCAAGCAAGTTGAATGAATTAGAGTCATTTGTTGGCTCCACTGTACCAAAGAATGTTGACATTCTTCCTCCTCAACCTTCAAATACCAAAGGATGTGGAAAACGGATCAAGGGGGGAAAGGAGAAGGCAATGGAGCAACAACAAAAAAGAACGAGACTTTGTAAAACTTGCCGACAATTTTCATATCATGATAGTCGTAATTGTCCCACAAAATCCTCTTCCTAA 2364 0.3545 MDLEVEIERFLTRLQWMEEENSESGDREPGSNNFIKMGDDSIDLTTPTKGLNDPVDTLEEWVPKCDEEIKPVVGKVFDTLEQGGDFYQRYAHTAGFSVRKATETKDKNGETKWKYFLCSKEGFKLETKEGVTELLVDDKKLPKTRRRKLTREGCNARIVFKRTQEGKYEVVRFHEGHTHALATPKKKQFLRSARSINNVHKNLLHCYNRANVGPSKVYQLLKEQVGSYDSIGCTKRDLQNYSRDLKELIKDSDAHMFLDNFRRKNEMNHSFYYDYEVDNEGRLKYVFWADGLCRKNYSLFGDVISFDTTYNTNKYCMIFAPFTGINHHRQSITFGAAFLADEKVESFEWLFETFLKAMGGHKPIVIITDQDPAMKIAIEKVFTGSSHRFCMWHILKKLSEKVGVSLNSNADFNSRFKTCVWNSESPDEFELTWKAIIIDFKLEENGWLSQMYDMRSMWIPAYFKSIFLAGILRTTSRSESENSFFGNYLNKNLSLVEFWMRFDSALEAQRHNELLADNDTLHSMPELKMHKDIEKHGREVYTHQNFYIFQGELWSACVDCGVEETKEDNGQLLIFILEQLVVNGNKVSKHRKVVYNPSNHIAHCSCKMFESEGMPCRHILFVLKGKGLSEIPSYYIINRWTKLATSTPIFYYDGNVLEACSKLESESKLISDAWAKLFKCMHLAGTCKDKLLLVINEASSIEMKLTKMKGDVGASKLNELESFVGSTVPKNVDILPPQPSNTKGCGKRIKGGKEKAMEQQQKRTRLCKTCRQFSYHDSRNCPTKSSS. 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05716 787 Pfam SWIM zinc finger 602 623 IPR007527 GO:0008270
Seca12g05716 787 ProSiteProfiles Zinc finger SWIM-type profile. 591 627 IPR007527 GO:0008270
Seca12g05716 787 MobiDBLite consensus disorder prediction 739 758 - -
Seca12g05716 787 Pfam MULE transposase domain 303 397 IPR018289 -
Seca12g05716 787 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 66 681 IPR031052 GO:0006355
Seca12g05716 787 Pfam FAR1 DNA-binding domain 85 182 IPR004330 -
Seca12g05716 787 SMART 26again6 602 629 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05716 Seca-Chr12 148835490 148838776 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g05716 FAR1 1.8e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05716 - - mtr:112420857 936.791