Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05706 ATGTTTTTTAATCAGTACATCCTTGAAACGAGTGGGCTTCCACAAGAGCACGAGCAATTGAAGCAACTCAGAGAGAAAACCGTGCAGAAGTACGGGGACATGAATGTGCCGGTGGATGAGGCACAGTTCATATCTATTCTTCTAAAAGTGATGAATGCGAAGAAAACACTTGAAATTGGAGTCTTCACTGGTTATTCTCTTCTTGCTACAGCTCTTGCTCTACCTCCTGATGGCAAGGTAACGGCAATTGATGTGAATAGAGAAACGTACGAGTCTGGACTGCCCTTCATTCAGAAGGCAGGAGTCGAGCACAAAATAGACTTTATCCATGGGGATGCATTTTCAGCCATCAATGCTCTTATCGATCAGGGAAAACATGAAGAATCATTTGATTATGTATTTGTGGATGCTGTGAAGGAAGATTACATAAAGTATCACGAGCCATTACTGAAATTGGTGAAGAAGGGTGGTTTAATTGCATATGACAACACTTTATGGCTTGGTTCGGTGGCCATGTCTGAGGACGATATTGAAATGACAGATATTTTGAGGCATAACAGAAAGCCACTACGTGAATTCAACACCTTCATAGCAAATGATACTCGTGTAGAATCAATAATCCTTTCTTACATCCTTGAAACGAGTGGGTATCCAAAAGAGCACGAGCAATTGAAGCAACTCAGAGAGAATACCGCGCAGAAATACGGGAGTGTGATGAATGTGCCGGTGGATGAGGCACAGTTCATATCTATTCTTCTAAAAGTGATGAATGCGAAGAAAACACTTGAAATTGGAGTCTTCACTGGTTATTCTCTTCTTGCTACAGCTCTTGCTCTTCCTCCTGATGGCAAGGTAACAGCAATTGATGTGGATAGAGAAGCGTACGAGACTGGATTGCCCTTCATTCAGAATGCAGGAGTGGAGCACAAAGTTGACTTTATCCATGGGGATGCATTCTCAGTCATGAATGGTCTTGTTGATCAGGGAAAACATGAAGAATCATTTGATTATGCATTTGTTGACGCTGAGAAGGAAAACTTCATGAAGTATCACGAGCTGTTATTAAAATTGGTGAAGAAGGGTGGAATAATTGCATATGACAACACCTTATGGTCTGGTTCGGTGGCCATGTCTGAGGACGATGAAATGCCAGATTTTATTAGGAAAAAAAGGAAGTCTGCACTTGAATTCAACACCTTCATAGCAAATGATACTCGCATAGAATCAACAATCCTTTCTGTTGGGGACGGTGTAACCCTATGCCGACGTCTCTGA 1275 0.418 MFFNQYILETSGLPQEHEQLKQLREKTVQKYGDMNVPVDEAQFISILLKVMNAKKTLEIGVFTGYSLLATALALPPDGKVTAIDVNRETYESGLPFIQKAGVEHKIDFIHGDAFSAINALIDQGKHEESFDYVFVDAVKEDYIKYHEPLLKLVKKGGLIAYDNTLWLGSVAMSEDDIEMTDILRHNRKPLREFNTFIANDTRVESIILSYILETSGYPKEHEQLKQLRENTAQKYGSVMNVPVDEAQFISILLKVMNAKKTLEIGVFTGYSLLATALALPPDGKVTAIDVDREAYETGLPFIQNAGVEHKVDFIHGDAFSVMNGLVDQGKHEESFDYAFVDAEKENFMKYHELLLKLVKKGGIIAYDNTLWSGSVAMSEDDEMPDFIRKKRKSALEFNTFIANDTRIESTILSVGDGVTLCRRL. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05706 424 CDD AdoMet_MTases 262 366 - -
Seca12g05706 424 Pfam O-methyltransferase 15 209 IPR002935 GO:0008171
Seca12g05706 424 Pfam O-methyltransferase 213 424 IPR002935 GO:0008171
Seca12g05706 424 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 208 423 IPR029063 -
Seca12g05706 424 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 1 209 IPR002935 GO:0008171
Seca12g05706 424 PANTHER O-METHYLTRANSFERASE-RELATED 207 424 - -
Seca12g05706 424 CDD AdoMet_MTases 57 161 - -
Seca12g05706 424 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 200 424 IPR002935 GO:0008171
Seca12g05706 424 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 5 209 IPR029063 -
Seca12g05706 424 Gene3D Vaccinia Virus protein VP39 209 424 IPR029063 -
Seca12g05706 424 Gene3D Vaccinia Virus protein VP39 2 208 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05706 Seca-Chr12 148680253 148689413 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05706 209 424 Monolignol Biosynthesis Gene Families AT1G67990 54.128 4.23e-81 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05706 K00588 K13272 gmx:100813350 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05706 12 148680253 148689413 Seca12g05706 12 148680253 148689413 ECH