Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05702 ATGGTGAAGTACTCAAGAGAGCCTGACAATCCCACCAAATCCTGCAAGGCTCGAGGTGCTGACCTTAGAGTTCATTTCAAGAACACTAGGGAAACTGCCTTTGCCATCAGAAAGTTGCCCTTGGCAAAGGCTAAAAGGTATTTGGAGGATGTTCTCGCTCACAAACAGGCCATTCCATTCAGACGTTTCTGTCGTGGTGTTGGGAGGACAGCGCAGGCAAAGAACAGACATTCTAATGGACAAGGAAGGTGGCCTGTCAAATCGGCTAGATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAAGTAAAAGGTTTGGATGTTGATGCTCTATACATTTCTCATATCCAAGTCAATCAGGCTCAGAAGCAAAGGCGCCGAACATACCGAGCCCATGGGAGAATCAACCCTTACATGTCATCTCCCTGCCACATAGAGTTGATATTATCTGAAAAGGAAGAACCAGTCAAGAAGGAGCCCGAGACTCAGTTGGCAACCAGCAAGAAGAAGTCCCAAGCTCTTCGAAGTGGTGCTTCATCTTAA 549 0.4627 MVKYSREPDNPTKSCKARGADLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSARFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKSQALRSGASS. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05702 182 NCBIfam 50S ribosomal protein L22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Seca12g05702 182 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Seca12g05702 182 MobiDBLite consensus disorder prediction 168 182 - -
Seca12g05702 182 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Seca12g05702 182 Gene3D Ribosomal protein L22/L17 1 181 IPR036394 GO:0003735|GO:0005840|GO:0006412
Seca12g05702 182 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Seca12g05702 182 PANTHER 60S RIBOSOMAL PROTEIN L17 1 175 IPR005721 GO:0003735|GO:0006412|GO:0015934
Seca12g05702 182 MobiDBLite consensus disorder prediction 154 182 - -
Seca12g05702 182 FunFam 60S ribosomal protein L17 1 175 - -
Seca12g05702 182 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Seca12g05702 182 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05702 Seca-Chr12 148641080 148644369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05702 1 182 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 88.462 9.05e-119 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05702 K02880 - gmx:100816536 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05702 12 148641080 148644369 Seca12g05702 12 148641080 148644369 ECH
Seca6g01699 6 71494133 71496773 Seca12g05702 12 148641080 148644369 PCT