Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05694 ATGATGGATGTTGCGGAGGTTGAAGAAAATCTATTCGCTATTAGTGATGCCAAGTTACATGGACAAATGTGCAAGGCTCTTTCTATAATATATTGCAAAGTATTGTCAATATTTCCTTCTTTAGAAGCAGCTAGACCTAGGAGTAAAACTGGAATTCAGGCATTGTGTTCATTGCATGTAGCCTTAGAAAAAGCCAAGAGTGTTCTTCAACACTGCTCAGAGTGTAGTAAACTTTACTTGGCTGTTACTGGGGATTCCGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAGACGGGTGGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTTCAAGAGATTGTGAATGAATTTGAGAGTGTGGAATTTGCTCTTGACCCATCAGAGAAGCAAGTTGGTGATGATTTAATTGCATTGCTTCAGCAGGGGAGAAAGTTTAATGACTCTAGTGACAGTAATGAGCTTGAATCTTTTCACCAGGCTGCTACTAGACTTGGAATCACATCTTCAAGAGCAGCTCTTGCTGAAAGAAGAGCTCTCAAGAAACTTATAGACAGGGCTCGGGCTGAGGAAGACAAGCGGAAGGAATCAATTGTTACATATCTTTTACATCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCAGATGACAATGATTCTCAGGGTTCTGCACCTTGTTCTCCCACTGTTATAGGATCTATTGAGGATGGTATTCCTGGTGGTCAATGTCAAGCTTTTGACAGACAACTATCAAAACTTAGCTCCTTTAATTTCAAGCAAAATAATAATAGCGAATCGGGGCAGATGCCTGTTCCACCTGAAGAGTTAAGATGTCCAATATCTCTGCAGCTCATGTATGATCCGGTTATCATTGCTTCTGGCCAAACGTATGAAAGGGTTTGCATAGAGAAATGGTTCAGTGATGGGCACAACAACTGCCCAAAGACCCAACAGAAACTTGATCATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTGTTCCTGAAGGCCCTCCTGAATCTCTTGATCTTAACTACTGGAGATTGGTATTATCAGAGTCTGAATCTACAAATTCGAGATCTGTAAATAGTGTCAGCTCTTGCAAGTTGAAGGGTGTCAAAGTGGTTCCTATAGAGGAGAGTGGTATCTCAGAGGAATCTGGGGAAAATGGAACTGAAAGTGTGTCTGCACAAGAGGAAGACACTAAGCAGTATTTTAGTTTTCTGAAAGTCTTGACTGAGGGGGACAATTGGGAGAGGAAATGTGAAGTGGTAGAACAGTTAAGGCTGTTTCTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGGTTTGTTGAAGCACTTCTACAGTTTTTACAATCAGCTGTGCATGAAGGAGATTTGATGGCTCAGGAAAGTGGAGCAATGGCTCTCTTCAACCTGGCTGTGAATAACAACAGGAATAAGGAAATCATGTTATCAGCTGGAGTATTATCATTGTTGGAGGAAATGATTTCTAACACTAGTTCCTATGGTTGTGCAAGCGCTCTATATCTGAATCTCTCTTGCCTAGAAGAAGCCAAGCCTATGATTGGCATGAGTAATGCTGTACAGTTCCTCGTCCAGCTCCTTCAATCTGACTCTGATGGTCAATGCATGCAAGATTCTCTCCATGCTCTCTATAATCTTTCTACTGTGCCCTCCAATATCCCATACCTCCTTTCATCTGGCATCATTAATGGTCTACAATCCCTTCTCGTAGGCCAGGGTGATTGCATGTGGACAGAAAAATGCATAGCTGTTTTGATAAATTTAGCCACTTCTCAAGTTGGAAGGGAGGAAATGGTATCAACTCCTGGACTCATTGGTGCATTGGCTTCGATATTGGACACCGGTGAGCTCCTAGTGCAGGAACAAGCTGTCTCTTGTCTCCTAATTTTGTGCAACAGAAGTGAGATATGTAGCGAGATGGTCCTGCAAGAAGGAGTTATACCTGCATTGGTATCAATATCAGTGAATGGGACTCCAAGAGGGAGGGAAAAAGCACAGAAACTTTTGATGCTGTTCCGAGAGCAGCGACAACGAGACCCTTCACCAGTTAAGACACATCAGTGTCCACCTGAAACTAGTGATTTGTCTGTGCCGCCTGGTGAAATGAAACCTCTATGTAAATCCATGTCTAGAAGAAAGACTGGGAAAGCTTTTGGCTTTTTCTGGAAAAGCAAGAGCTATTCTATACACCAGTGTTAA 2301 0.4189 MMDVAEVEENLFAISDAKLHGQMCKALSIIYCKVLSIFPSLEAARPRSKTGIQALCSLHVALEKAKSVLQHCSECSKLYLAVTGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFESVEFALDPSEKQVGDDLIALLQQGRKFNDSSDSNELESFHQAATRLGITSSRAALAERRALKKLIDRARAEEDKRKESIVTYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVIGSIEDGIPGGQCQAFDRQLSKLSSFNFKQNNNSESGQMPVPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDGHNNCPKTQQKLDHLCLTPNYCVKGLVASWCEQNGVPVPEGPPESLDLNYWRLVLSESESTNSRSVNSVSSCKLKGVKVVPIEESGISEESGENGTESVSAQEEDTKQYFSFLKVLTEGDNWERKCEVVEQLRLFLRDDEEARIFMGANGFVEALLQFLQSAVHEGDLMAQESGAMALFNLAVNNNRNKEIMLSAGVLSLLEEMISNTSSYGCASALYLNLSCLEEAKPMIGMSNAVQFLVQLLQSDSDGQCMQDSLHALYNLSTVPSNIPYLLSSGIINGLQSLLVGQGDCMWTEKCIAVLINLATSQVGREEMVSTPGLIGALASILDTGELLVQEQAVSCLLILCNRSEICSEMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRQRDPSPVKTHQCPPETSDLSVPPGEMKPLCKSMSRRKTGKAFGFFWKSKSYSIHQC. 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05694 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 467 513 IPR000225 GO:0005515
Seca12g05694 766 Gene3D - 401 716 IPR011989 -
Seca12g05694 766 Pfam U-box domain 282 351 IPR003613 GO:0004842|GO:0016567
Seca12g05694 766 SUPERFAMILY RING/U-box 271 357 - -
Seca12g05694 766 ProSiteProfiles U-box domain profile. 280 354 IPR003613 GO:0004842|GO:0016567
Seca12g05694 766 SUPERFAMILY ARM repeat 431 707 IPR016024 -
Seca12g05694 766 SMART arm_5 456 500 IPR000225 GO:0005515
Seca12g05694 766 SMART arm_5 541 582 IPR000225 GO:0005515
Seca12g05694 766 Coils Coil 176 196 - -
Seca12g05694 766 PANTHER U BOX DOMAIN-CONTAINING 22 710 - -
Seca12g05694 766 FunFam RING-type E3 ubiquitin transferase 280 354 - -
Seca12g05694 766 CDD RING-Ubox_PUB 282 334 IPR045210 -
Seca12g05694 766 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 354 IPR013083 -
Seca12g05694 766 MobiDBLite consensus disorder prediction 710 735 - -
Seca12g05694 766 SMART Ubox_2 284 347 IPR003613 GO:0004842|GO:0016567
Seca12g05694 766 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 552 595 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05694 Seca-Chr12 148511596 148517120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05694 2 765 U-box Gene Family AT1G24330 67.266 0.0 1048
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05694 - - gmx:100794099 1334.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05694 12 148511596 148517120 Seca12g05694 12 148511596 148517120 ECH
Seca6g01715 6 71804217 71809307 Seca12g05694 12 148511596 148517120 PCT