Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05686 ATGGCTGCTGGAAGACATGGCGGTTACCGCGAAAACGAATTTAGGGACCGCGAGTCCAATTTGGATGTTTCGAGGCGCGGTCTCACGAATTCGAAAGAAGAGTATGATCAGGTTAGGAATGGTGGCCGTGATGTTGTGAGGGGTGGGAGCAGGGATTCGAGAGATAGGATTAGGGTGAGGCAGAAGGAGATTCGGGAAAGAGAAGCCGTCAGTAATGGCAATTACCGATCCTCTTCGAGTCGGAGTAACTCCGGAAGCAGTGGTGGACTTGGCCCTCGCCGGTGTGGTTTTTCTGCCAAGACTTTGGATAGAGAGCCTGGTGAGCTTTCCAGTGAGAGTGGGTCTGATGATGCTATTGAATCAGAGTCAGGGGTGAAAGGTGCTGAGGTTGCCATGTTTGAAGGAAACAGTACTCTGTCGCCACCACCACAGGAGAGGAAAAGGAAATTTTCACCCATAGTGTGGGATCAGGATGACAAGGAAGTGAAGGAGTCATCCAAAGTTAGGGTTTCCACTACATCAGTGACTGCTCTTCCTCCTCTGCGTCAGCTGCCAAAAGAAATGCGTCCTGCTAGGAACAGAGAAACTGAGACTCCTGAGTTGCGGGCAGCAGCTAAGGTTACCTTGCCCTCTCCTTCAAGTTTGCAGTCCTTGTCTCCAAAGCAGACTTGGGGTAATGATCAGGAAGCTGAGCAGCCAGAAGAAGGTGAAGATTATGTTCCAACACGTAATATATCATCCTCAAGATGGGCAGCTGGAGATAACTCTCCTGGTGATGAGGGTGAAATCCTTGATGATGAGGAAATGCCTAAAAGGAGGAGGAGGCTGTCTCCTGAGTTGTTGGAGACTAGGGTGAGGAACAAGTTATTGAGCCCAGATGAATCTAAAATAGAAAGTTCTGAAGGAGCTAGAGCCAAATCATCAGGATCTGAAGAAAGAGGAATTATCCATGGGAGAACATCCAGTGGTGATGATCATCCTGGTATTGAATCAGAGAATGATGACTATATGGAGATTGATGCTCACGGTATGAAAAGTGACACCAGTATTAGTCACTCAGATACAGAATCTGAAGATGAAGATGATAGGCGGGAGACTCCAGAACCTCCAGCTCCACCTCAAAGAACGGTCAACATGCTTCAGGGTTGTAGAAGTGTTGATGAGTTTGAGAGACTTAATAAGATAGATGAAGGAACATACGGTGTTGTATATAGGGCTAGAGATAAGAAGACTGGGGAAATTGTAGCATTGAAGAAGGTCAAGATGGAGAAGGAAAAAGAAGGCTTCCCACTGACTTCTCTTAGGGAAATAAACATTCTTCTTTCTTTTCACCACCCATCCATAGTTGATGTTAAGGAAGTAGTGGTAGGAAGTAGCCTTGATAGTATTTTCATGGTTATGGAATACATGGAACATGATCTTAAAGGATTAATGGAGGCAATGAAGCAACCATTTAGCCAGAGTGAAGTAAAGTGCTTAATGATCCAGCTTTTAAAAGGTGTGAAGTATCTTCATGACAACTGGGTGCTTCATAGGGATTTAAAGACTTCAAACCTACTTCTAAATAATAGGGGTGAGCTAAAAATTTGTGATTTTGGGTTGGCTCGTCAGTATGGGAGTCCCTTGAAACCATATACGCACCTGGTGGTTACACTTTGGTACAGGGCACCTGAACTTCTTCTGGGGGCAAAACAGTATTCAACAGCTATTGACATGTGGTCTCTTGGTTGTATAATGGCTGAACTATTGGCTAAGGAACCACTATTTAATGGGAAAACGGAATTTGATCAACTTGACAAGATTTTCAGGATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAAAATTACCTGGAGTCAAGGTCAACTTTGTCAAGCACCAGCTTCCAACTTTGGGTGGTTCTGGTCTGGCTATCTGGCCTTCCTTTGGTGACTTGTACTGTTACACAACATTTCTATTTTGTATTAACAACCAGAATGTTCCTTTCAGGTATAATCTCCTCCGTAAAAAGTTTCCTGCCACCTCATTCACTGGATCTCCAGTTCTTTCTGATTCTGGATTTGATTTGTTGAACAAGCTTCTGACTTATGACCCTGAAAAGCGGATCACAGCTGAAGCTGCTCTCAATCATGAATGGTTCCGTGAAGTTCCTCTCCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGGCGGATGCGGAGAATATTGAAGAGCCCGGATCCTTTAGAGGAGCAGCGCCGGAAGGAGTTGCAGCAGGGTGAATCAGGGACCGGTGGAATTTTTGGCTAG 2316 0.4503 MAAGRHGGYRENEFRDRESNLDVSRRGLTNSKEEYDQVRNGGRDVVRGGSRDSRDRIRVRQKEIREREAVSNGNYRSSSSRSNSGSSGGLGPRRCGFSAKTLDREPGELSSESGSDDAIESESGVKGAEVAMFEGNSTLSPPPQERKRKFSPIVWDQDDKEVKESSKVRVSTTSVTALPPLRQLPKEMRPARNRETETPELRAAAKVTLPSPSSLQSLSPKQTWGNDQEAEQPEEGEDYVPTRNISSSRWAAGDNSPGDEGEILDDEEMPKRRRRLSPELLETRVRNKLLSPDESKIESSEGARAKSSGSEERGIIHGRTSSGDDHPGIESENDDYMEIDAHGMKSDTSISHSDTESEDEDDRRETPEPPAPPQRTVNMLQGCRSVDEFERLNKIDEGTYGVVYRARDKKTGEIVALKKVKMEKEKEGFPLTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKGLMEAMKQPFSQSEVKCLMIQLLKGVKYLHDNWVLHRDLKTSNLLLNNRGELKICDFGLARQYGSPLKPYTHLVVTLWYRAPELLLGAKQYSTAIDMWSLGCIMAELLAKEPLFNGKTEFDQLDKIFRILGTPNETIWPGFSKLPGVKVNFVKHQLPTLGGSGLAIWPSFGDLYCYTTFLFCINNQNVPFRYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFREVPLPKSKEFMPTFPAQHAQDRRMRRILKSPDPLEEQRRKELQQGESGTGGIFG. 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05686 771 Gene3D Phosphorylase Kinase; domain 1 374 471 - -
Seca12g05686 771 ProSiteProfiles Protein kinase domain profile. 389 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05686 771 MobiDBLite consensus disorder prediction 187 201 - -
Seca12g05686 771 MobiDBLite consensus disorder prediction 1 377 - -
Seca12g05686 771 MobiDBLite consensus disorder prediction 265 369 - -
Seca12g05686 771 FunFam cyclin-dependent kinase G-2 isoform X1 374 471 - -
Seca12g05686 771 MobiDBLite consensus disorder prediction 8 70 - -
Seca12g05686 771 CDD STKc_CDC2L1 383 716 IPR045267 GO:0004674|GO:0005524|GO:0006468
Seca12g05686 771 MobiDBLite consensus disorder prediction 746 771 - -
Seca12g05686 771 MobiDBLite consensus disorder prediction 71 89 - -
Seca12g05686 771 Gene3D Transferase(Phosphotransferase) domain 1 472 749 - -
Seca12g05686 771 SMART serkin_6 389 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05686 771 MobiDBLite consensus disorder prediction 209 229 - -
Seca12g05686 771 SUPERFAMILY Protein kinase-like (PK-like) 381 722 IPR011009 -
Seca12g05686 771 MobiDBLite consensus disorder prediction 746 760 - -
Seca12g05686 771 PANTHER CELL DIVISION PROTEIN KINASE 387 722 - -
Seca12g05686 771 Pfam Protein kinase domain 389 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05686 771 ProSitePatterns Serine/Threonine protein kinases active-site signature. 509 521 IPR008271 GO:0004672|GO:0006468
Seca12g05686 771 MobiDBLite consensus disorder prediction 149 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05686 Seca-Chr12 148410995 148418284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05686 385 720 Core Cell Cycle Gene Families AT1G20930 42.733 1.62e-85 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-PITSLRE Seca12g05686 Pkinase 1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05686 K08818 - gmx:100792524 1119.76