Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05677 ATGGAGTCAGATTCAGACTCCGATGGATCTCATGTCTCTGCCACTCCTCCAAGACAATCAAGTCCACCACCACCACAACCACAACCACCTCTTCTATTTTCCAAAAAGCTACAACGCAAAACCTGCAAGAGTCCCTCTTCTAAATCCACAATCAGAACCAAACCCTCAAAACCCAAACCATTCCCTTCTGAACCCTTGAAAAGCCCTTCAGAACCCGATCCAAACCAACAAGACCCTTTCTGCCTCCCTACCCTACCCTTCCAAATTCGGCGACCCTCTGATTGTGTTCCCGCGCCCCAGTCAATTGAAATTGAAACCCTCCCCGCTGGGTTCTTCTCCAAATCCGCTTCCTTCTCGAAGATTCGAAGACCCTTTCTCAATTTAGAACCTTCTGGAAACGAACCTGTTCTTAATTCCGCGTCCAGTTCGTGCTCCAAGGCTGAGAGCGGCGATGCTGGAAACTCTGGGAAGTCCCGGAAGAAGCATCCTAACCTCATAGGTGTTAGCTTGCCGATGCCAACTGTGAAGTTGCGAAAATGCGGTGGTGGTGGGGAAGGAAACTTTGTGAAGTTGAACATGAGTGGGAAGAGGAAGAAGTTTTTGAACAAAGGGTGGAAGAAAAAGGGGAAATTTGGTCGTTTTAAAAGGTACAAGAGAAGTAAAGGTGAATTGCGACATGAAGGGGAGGATCAAGTGCAGCTTTTTGAGGAGGATGGTTTGGTTGTTGGAAGTGCAGAGCAAAAGAAAAAGCAAAAAGGGTGTTGTAAGACAAGAGAGATTGATTGCGAAGTGATGGAAGAGGCTGTGTCTGCAGCTCGAGTTGAGCATTCAGATGAGAGTTTGGTGAAGTTGTTGAAATTGATTTATGGTTATGATTCTTTTCGTGATGGGCAGCTTGAAGCAATCAAGATGGTTCTTGCTGGGAAGTCAACTATGCTTATTTTGCCGACTGGTGCAGGGAAATCGCTGTGCTATCAGTTGCCTGCTGTGATTTTGCCTGGGGTTACACTGGTTGTTAGTCCTTTGGTAGCTTTGATGATTGATCAGCTAAGGCAATTGCCTCCTGTCATTAGGGGTGCTCTACTATGCAGCACTCAGGTGCTTTTTGTTTCACCAGAGCGGTTCCTGAACGAAGAGTTTCTGTCTACTATTTCTGCTATGTCAGATGTCTCACTTGTTGTTATTGATGAAGCGCATTGTATATCTGAATGGTCTCACAATTTCCGACCTTCATTCATGAGACTTAGAGCATCTCTGCTTCATAAAAGGCTTAATGTAGGTTCTGTTCTTGCAATGACAGCAACTGCGACAACAACAACTTTAGATGCCATCATGTCTGCTCTAGATATTCCTTGCACAAATCTTATTCAGAAGGCACATTTAAGGGACAATTTGCGTTTATCAGTGTCTTTGGTAAAAAATAGGCAAGTTAGATGCTTCTATTTACTGCTTCAGCTTGTATACACTCCTTATCTGAACTTTGTTAAACTTATACATCAATACTTTGAACATTTTGAATATGATAGAATGAAAGACCTATTGGTTCTGATAAAGTCTTCTCCTTTTGTGGAAGTTCGAAGCATCATCATATACTGCAAATTTCAGTCTGAAACTGATCTAATTAGCAGATACTTGAATGATAACAATATATTGGCAAAGAGTTATCATAGTGGTATCACTGCAAAGGAACGTAGCTACGTGCAGGAGTTGTTTAGTTCCAACAAAATCAGAGTGGTTGTTGCAACTGTGGCATTTGGCATGGGACTAGATAAAAGAGATGTTGGAGCAGTAATTCATTACAGTTTGCCTGAAAGTCTGGAAGAGTATGTTCAGGAGATAGGCCGTGCTGGGAGGGATGGGAGGTTGTCCTATTGTCACCTATTTTATGACGATGAGACATACTTCAAACTTCGTAGTCTAATGCACAGTGAAGGAGTAGATGAATATGCAGTGAATAAATTTCTGCATGAAGTGTTTCCTGCTGACAAAAGCTCCTGTGGGAAAATCTGTTCATTGATCAAAGAATCTGCTTCACGCAGGTTTGACATGAAAGAAGAGGTCCTCTACTCAATACTATAA 2079 0.4276 MESDSDSDGSHVSATPPRQSSPPPPQPQPPLLFSKKLQRKTCKSPSSKSTIRTKPSKPKPFPSEPLKSPSEPDPNQQDPFCLPTLPFQIRRPSDCVPAPQSIEIETLPAGFFSKSASFSKIRRPFLNLEPSGNEPVLNSASSSCSKAESGDAGNSGKSRKKHPNLIGVSLPMPTVKLRKCGGGGEGNFVKLNMSGKRKKFLNKGWKKKGKFGRFKRYKRSKGELRHEGEDQVQLFEEDGLVVGSAEQKKKQKGCCKTREIDCEVMEEAVSAARVEHSDESLVKLLKLIYGYDSFRDGQLEAIKMVLAGKSTMLILPTGAGKSLCYQLPAVILPGVTLVVSPLVALMIDQLRQLPPVIRGALLCSTQVLFVSPERFLNEEFLSTISAMSDVSLVVIDEAHCISEWSHNFRPSFMRLRASLLHKRLNVGSVLAMTATATTTTLDAIMSALDIPCTNLIQKAHLRDNLRLSVSLVKNRQVRCFYLLLQLVYTPYLNFVKLIHQYFEHFEYDRMKDLLVLIKSSPFVEVRSIIIYCKFQSETDLISRYLNDNNILAKSYHSGITAKERSYVQELFSSNKIRVVVATVAFGMGLDKRDVGAVIHYSLPESLEEYVQEIGRAGRDGRLSYCHLFYDDETYFKLRSLMHSEGVDEYAVNKFLHEVFPADKSSCGKICSLIKESASRRFDMKEEVLYSIL. 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05677 692 CDD SF2_C_RecQ 512 629 - -
Seca12g05677 692 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 391 400 IPR002464 -
Seca12g05677 692 MobiDBLite consensus disorder prediction 17 31 - -
Seca12g05677 692 FunFam ATP-dependent DNA helicase Q-like 5 499 687 - -
Seca12g05677 692 MobiDBLite consensus disorder prediction 132 152 - -
Seca12g05677 692 Gene3D - 365 453 IPR027417 -
Seca12g05677 692 MobiDBLite consensus disorder prediction 1 86 - -
Seca12g05677 692 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 634 IPR027417 -
Seca12g05677 692 SMART ultradead3 290 470 IPR014001 -
Seca12g05677 692 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 302 454 IPR014001 -
Seca12g05677 692 Gene3D - 250 364 IPR027417 -
Seca12g05677 692 MobiDBLite consensus disorder prediction 39 56 - -
Seca12g05677 692 Pfam Helicase conserved C-terminal domain 524 619 IPR001650 -
Seca12g05677 692 Gene3D - 499 686 IPR027417 -
Seca12g05677 692 PANTHER DNA HELICASE RECQ FAMILY MEMBER 270 666 - -
Seca12g05677 692 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 509 666 IPR001650 -
Seca12g05677 692 SMART helicmild6 539 620 IPR001650 -
Seca12g05677 692 Pfam DEAD/DEAH box helicase 296 440 IPR011545 GO:0003676|GO:0005524
Seca12g05677 692 MobiDBLite consensus disorder prediction 128 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05677 Seca-Chr12 148348001 148351768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05677 498 652 Eukaryotic Initiation Factors Gene Family AT3G19760 28.395 6.48e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05677 K10730 - gmx:100811214 775.778