Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05672 ATGGCCATTTTGGATGCTCTGTTAGGAACCGCCAATGTGGCATTCTTCTATGTAATTTTGATATGGCTTTTACTTCACAGTTTGACACAGAGCAAGCGTAACCATGTTGAGTATAATTCCAAACACTCACCAACATTCTTCGCTAAAATCACTTTTCTCTTAAGTGTTGTTATCTCCGTTTTGAACATGGCTTTTGCATTTTATGAATACAGCACTCAGAGAATCATAGGGTTTAACTCTGTTTCCTTGGCTCTAACTTGGGTTTTAGCAACCGTAGTTTCGTTTTATTCATTGAAGACAACACTCAAGGAGAACAAAAGGTTCCCGTTTGTGCTAATTCTATGGTGGATTTTTGCTAGTGTTGTAGATGTATTCTCAGTGTCTTTAGTGCTAGTGAAAAATCTAGAATCCTTGAATTTGTGGATTTTTTTGTTGGAGGATAATGTAGTTGATGCGGTTTCCTTGCCTATGCTGTTGCTTCTGTGTTTCAATGCACTGCCTAATGTTTCTGCAAGGGAACAAAGTGACATGGAACAGCGGTTACTTCAGAAAGAGTTGGAATTTTCAAGGGATGAAGGTGAAGTGGTCTTCACAAATGCAAGCATGTGGAGCAAACTCACGTTTAGATGGCTGAATCCTATATTTAACAGGGGTCGGATTCAGAAACTTGAACTTGCGCATATTCCTTCTGTTCCTCATTCTGAAACTGCAGAAAGTGCTTCTTTCATGTTGCTAGAATCACTTCGCAAACAGAAACTTGAAGGGGGTTCTTTGACAAAAGCTATCACACATTCTATATGGAAATCCTTGGCCTTAAATGCAATTTTAGCAGGGGTTAACACTATTGCCTCTTATATTGGTCCATTGTTGATCTCAAGCTTTGTGAATTTTTTATTGGAGAATAATAGTAATGATAATTCAAGCATCCAATATGGATTGATTCTTGCATTCATTTTCTTCCTGTCAAAGACGGTGGAGTCTCTGAGTCAGAGACAATGGTACTTTGGTGCTCAACGAATTGGAATTCAGGTGCGTGCAGCTCTTATGGCTTTAGTTTATAGCAAGTCCCTTATGATGAAGTGTGCTGGGCCTACACATGGTAAAGTCATAAATTTGATCAATGTGGATGTTGAAAGAATTGGGGATTTCTGTTGGTACATTCATGGAGTTTGGTTGCTTCCAGTTCAGGTCATTTTGGCCTTGGTAATCTTGTACATAAACCTGGGTTCTACCCCTTCATTTGCTGCACTTGCTGTCACCATTTTGGTCATGGTGTGTAACACACCTTTAGCCAATATGCAAGAAAATTTGCACTCCAAGATCATGGAAGCTAAGGATTCAAGAATCAAAGTGACTTCAGAAACCATGAAGAATATCAGAATTTTAAAACTGCATTCATGGGAATCCACATTCTTGCAGAAAATCCTCCAACTTAGGGACACAGAGAGGAGTTGGCTGCAGAAATACCTCTACACATGCTCAGCAGTAGCCACTCTGTTCTGGGCATCTCCAACTTTAGTTTCTGTTGTCACTTTTGGTGCTTGTATACTGGTGAAAACAGAACTAACAGCAGCTAAAGTCCTCTCAGCTTTGGCTACATTTCGTATCTTACAAGAACCAATTTACAACTTACCTGAGCTCATTTCCATGATAACTCAAACAAAAGTCTCTATTGATCGAATCCAAGAGTTCATTAAGGAAGAGGATCAGAACCAATTCATGAATAGGCATGCTTCGGAAACTTCAACAGTTGCTATTGAAATCAAACCAGGTGAATATGCGTGGGAAACAAATGATCACACCCACAAGAAACCAACTATTCAAATTACAAAAAAATTAATGATAAAGAAAGGTCAGAAGGTAGCAATTTGTGGGTCAGTGGGGTCTGGCAAATCAAGCTTGCTCTACTGCATGCTTGGTGAGATTCCATTAGTTTCTGGGGCGGTTACCAAAGTCTATGGGACTAGAAGTTATGTACCTCAAAGTCCCTGGATTCAATCTGGAACTGTAAGAGAAAATATATTGTTTGGAAAGCAAATGAATAAAGACTTTTATGAAAATGTTTTGGATGGCTGTGCTTTGCACCAGGACATCAACATGTGGAGTGATGGAGATTTGACCCTAGTGGAGGAGAGGGGCATAAACTTAAGTGGAGGGCAGAAACAACGAATTCAACTGGCAAGAGCTGTTTACAATGATTCAGATATTTATTTCCTTGATGATCCTTTTAGTGCTGTTGATGCTCATACTGGAAGTCATTTGTTTAAGAAATGTCTTATGAAACTTTTATACGATAAAACGGTTGTGTATGCTACCCATCAACTGGAATTCTTGGAAGCCGCAGATCTCATTTTAGTAATGAAAGATGGAAAAATTGTTGAGTTTGGAAGGTATAATGATCTCATAGCATGTCCCAATAGTGAACTCGTTCAACAAATGGCTGCCCATCAAGAAACAGTAAACCAAATAAATCCATGCCAAGAAGATGATCCTGTTAACTGCAAATCTTGCCACAAAAGTCAAATTGACGCTGTTGAAGAAAATATTCAAGAGACCATCATGGATTGGAAGAGAACCAGAGAAGAGGAAGCAATGACAGGACGAGTGAAATGGAGTGTTTACTCAACCTTTGTCACATCAGCTTATAAAGGAGCACTTGTTCCTGTTATTCTTCTCTGTCAAATTCTCTTTCAAGTTATGCAGATGGGAAGCAATTATTGGATTTCCTGGGCCACAGAAGAGAAGGATAGGGTCAGCAAAGGGCAGCTTATGGGAACATTTATTCTTTTGTCAGGTGGCAGCTCCATCTTCATACTGGGAAGGACTGTTTTAATGGCTACAGTTTCCGTGGAGACTGCTCAGCGTCTTTTTCATGGAATGATCACATCAGTTTTCAGGGCACCTGTTTCATTTTTTGACACCACGCCTTCAAGCCGAATTCTGAGTAGGTCATCAACGGATCAAAGTACAGTAGACACAGACATACCATACAGATTAGCTGGACTAGTATTTGCACTTATCCAGTTATTGAGTATCATCATGCTAATGTCCCAGGTTGCCTGGCAAGTCATTCTCCTCTTTTTTGCAGTCCTTGCTATCTCCATCTGGTATCAGGCTTATTACATCACTACAGCCAGGGAATTAGCCAGGATGGTAGGGATTCGAAAGGCGCCAATCTTGCATCATTTCTCAGAATCAATTGCTGGTTCTGCCACAATCCGTTGTTTCAATCAAGAGAAAATATTCCTAACCAAAGTTATGGATCTAATTGATGATTATTCTCGGGTAGCCTTTCACAATTATGCCACCATGGAATGGTTGTCAGTCCGAATCAATTTTCTCTTCAATCTGGTCTTCTATTTTGTTCTCGTCATCTTGGTCACTCTGCCAAGGTCTGCCATTGATCCCAGCTTGGCAGGTCTGGTAGCTACTTATGGTTTGAACTTGAATGTGCTTCAAGCTTGGGTGATATGGAATCTTTGCAATGTTGAGAACAAAATGATATCAGTTGAGAGAATATTACAATTCTCTAGCATACCAAGTGAAGCACCATTAATAATTGAAGCTTGTAGGCCTGAACCAGAGTGGCCCAGGGATGGAAAAATTGAGTTTCATAACCTTTATATACAGTATGATCCTGCTGCTCCTATGGTTCTCAAAGGTGTCACTTGCATCTTCCCAGGACAAAAGAAAATTGGAATAGTAGGTAGGACAGGGAGTGGAAAATCTACTCTGGTGCAAGCCCTATTTCGAGTGGTGGAGCCTTTGGAAGGATGGATACTTATTGATGGTGTACATATTTCCAAGATTGGTCTGCAAGATTTAAGATCTAAGCTTGGTATAATTCCCCAGGATCCAACCTTGTTTCTAGGTACTGTAAGGACAAACTTGGATCCTCTGGAACAACATTCAGATCAAGAACTTTGGGAGGTTCTCAGCAAGTGCCATCTTGCTGAAATAGTAAAGCAGGATCCAAGGCTTCTTGATGCACCAGTGGCTGAGAATGGAGAAAATTGGAGTGTTGGACAAAGACAGCTAGTTTGCCTTGCCAGGCTGCTACTGAAGAAAAGAAAAATTTTGGTTCTAGATGAGGCAACTGCATCCATTGACACTGCAACTGATAATTTAATTCAGAAGACTATCAGGGAAGAAACAAGTGGATGCACAGTCATTACAGTAGCTCATAGAATTCCTACAGTCATTGATAATGATTTGGTCTTGGTCCTTGATGAAGGGAGAATTGTGGAGTATGATCAACCTTCTCAATTGCTACAGAACAACTCTTCTTCATTCTCAAAGTTGGTGTCAGAATTTTTGAGGAGATCATCCCAAAGTAATTGTGAAAAAAGATAA 4353 0.4004 MAILDALLGTANVAFFYVILIWLLLHSLTQSKRNHVEYNSKHSPTFFAKITFLLSVVISVLNMAFAFYEYSTQRIIGFNSVSLALTWVLATVVSFYSLKTTLKENKRFPFVLILWWIFASVVDVFSVSLVLVKNLESLNLWIFLLEDNVVDAVSLPMLLLLCFNALPNVSAREQSDMEQRLLQKELEFSRDEGEVVFTNASMWSKLTFRWLNPIFNRGRIQKLELAHIPSVPHSETAESASFMLLESLRKQKLEGGSLTKAITHSIWKSLALNAILAGVNTIASYIGPLLISSFVNFLLENNSNDNSSIQYGLILAFIFFLSKTVESLSQRQWYFGAQRIGIQVRAALMALVYSKSLMMKCAGPTHGKVINLINVDVERIGDFCWYIHGVWLLPVQVILALVILYINLGSTPSFAALAVTILVMVCNTPLANMQENLHSKIMEAKDSRIKVTSETMKNIRILKLHSWESTFLQKILQLRDTERSWLQKYLYTCSAVATLFWASPTLVSVVTFGACILVKTELTAAKVLSALATFRILQEPIYNLPELISMITQTKVSIDRIQEFIKEEDQNQFMNRHASETSTVAIEIKPGEYAWETNDHTHKKPTIQITKKLMIKKGQKVAICGSVGSGKSSLLYCMLGEIPLVSGAVTKVYGTRSYVPQSPWIQSGTVRENILFGKQMNKDFYENVLDGCALHQDINMWSDGDLTLVEERGINLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTGSHLFKKCLMKLLYDKTVVYATHQLEFLEAADLILVMKDGKIVEFGRYNDLIACPNSELVQQMAAHQETVNQINPCQEDDPVNCKSCHKSQIDAVEENIQETIMDWKRTREEEAMTGRVKWSVYSTFVTSAYKGALVPVILLCQILFQVMQMGSNYWISWATEEKDRVSKGQLMGTFILLSGGSSIFILGRTVLMATVSVETAQRLFHGMITSVFRAPVSFFDTTPSSRILSRSSTDQSTVDTDIPYRLAGLVFALIQLLSIIMLMSQVAWQVILLFFAVLAISIWYQAYYITTARELARMVGIRKAPILHHFSESIAGSATIRCFNQEKIFLTKVMDLIDDYSRVAFHNYATMEWLSVRINFLFNLVFYFVLVILVTLPRSAIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERILQFSSIPSEAPLIIEACRPEPEWPRDGKIEFHNLYIQYDPAAPMVLKGVTCIFPGQKKIGIVGRTGSGKSTLVQALFRVVEPLEGWILIDGVHISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHSDQELWEVLSKCHLAEIVKQDPRLLDAPVAENGENWSVGQRQLVCLARLLLKKRKILVLDEATASIDTATDNLIQKTIREETSGCTVITVAHRIPTVIDNDLVLVLDEGRIVEYDQPSQLLQNNSSSFSKLVSEFLRRSSQSNCEKR. 1451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05672 1450 Gene3D - 609 840 IPR027417 -
Seca12g05672 1450 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 889 1165 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g05672 1450 FunFam ABC transporter C family member 3 1185 1437 - -
Seca12g05672 1450 CDD ABCC_MRP_domain1 586 791 - -
Seca12g05672 1450 SUPERFAMILY ABC transporter transmembrane region 889 1182 IPR036640 GO:0005524|GO:0016020
Seca12g05672 1450 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1202 1436 IPR003439 GO:0005524
Seca12g05672 1450 CDD ABC_6TM_ABCC_D1 272 561 IPR044746 GO:0140359
Seca12g05672 1450 CDD ABC_6TM_ABCC_D2 887 1177 IPR044726 GO:0140359
Seca12g05672 1450 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 271 553 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g05672 1450 Gene3D ABC transporter type 1, transmembrane domain 258 571 IPR036640 GO:0005524|GO:0016020
Seca12g05672 1450 Gene3D ABC transporter type 1, transmembrane domain 853 1183 IPR036640 GO:0005524|GO:0016020
Seca12g05672 1450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 612 804 IPR027417 -
Seca12g05672 1450 FunFam ABC transporter C family member 10 254 569 - -
Seca12g05672 1450 Pfam ABC transporter 613 743 IPR003439 GO:0005524
Seca12g05672 1450 Pfam ABC transporter 1219 1367 IPR003439 GO:0005524
Seca12g05672 1450 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1195 1428 IPR027417 -
Seca12g05672 1450 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 588 814 IPR003439 GO:0005524
Seca12g05672 1450 Pfam ABC transporter transmembrane region 272 540 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g05672 1450 Pfam ABC transporter transmembrane region 891 1129 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca12g05672 1450 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 198 1442 - -
Seca12g05672 1450 SMART AAA_5 1228 1421 IPR003593 GO:0016887
Seca12g05672 1450 SMART AAA_5 617 791 IPR003593 GO:0016887
Seca12g05672 1450 FunFam ABC transporter C family member 5 851 1183 - -
Seca12g05672 1450 ProSitePatterns ABC transporters family signature. 716 730 IPR017871 GO:0005524|GO:0016887
Seca12g05672 1450 Gene3D - 1185 1438 IPR027417 -
Seca12g05672 1450 SUPERFAMILY ABC transporter transmembrane region 265 568 IPR036640 GO:0005524|GO:0016020
Seca12g05672 1450 CDD ABCC_MRP_domain2 1200 1420 - -
Seca12g05672 1450 FunFam Multidrug resistance-associated protein 4 571 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05672 Seca-Chr12 148261333 148269328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05672 580 822 Calmodulin-binding Proteins AT2G36910 27.413 2.23e-20 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05672 - - mtr:25501707 2412.49