Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05666 ATGGATACAAAAAGTGGGAATGGGATTGAAGCACTTGTGAACATGGAAGAGCAAGACTTGGGAACGATGGAACTTGAATTAGTTTCAAGAGAAACCATCAAACCCTCTATACCCACTCTTCCTCACCTCAAAATTTACCCTCTCTCTTTCATAGATCACATCGTTTTCCGTAACTACATCCCATCACTTTTCTTTTACTCCCCACCAAACAACACCACCCATGACCAAACATCCAAAATTTCAGACCTCAAGAAATCGTTATCTCAAGTTCTATCCCGATACTACCCCTTTGCAGGAAGGCTTAGAGATCAACTCTCCATCGAATGCAACGACCAAGGTGTCTCGTTTCTAGTCGCAACAATCAAAGGAATAAACCTATCAACAATCCTCCACAACCCAACCGAAGCATTACTGAACCCTTTGTTCCCAGATGAATTGCAATGGAAGGTCATGGATCCAAGTGAAAGCATAATAGCCATTCAAATCAACTGTTTTCCATGCGGCGGAATAGCAATTAGTGTCTGTATGTGTCACAAAGTCGCAGACGCTGCCACTCTTTTCAATTTCGTCAATGATTGGGCCACAATTAACCGAAAAAAAGAAAATGAAAAAGAAAAAGAATTATTAGTACTATTACCGTTCCCTTCACTTGATGGAGGAGTTTCATTGTTCCCACAAGAGGACTTGCCTATATACCCTGAAGTTGTGTTTGGGAAAGACAAAACGGTTTGTAGAAGGTTTGTTTTCCAAGCCTCGAAGATCGAGTCTCTTAAAGCCATGGTATCTTCCCACGCGCTGCAAAATCCCACGCGCGTAGGAGTTGTAACTGCCTGGATCTACAAGCGTGCGGTTTCTGCCTTGGGATTGAAGTTCAAAACGACGTCGCTTAGGATTGCTGTTAACCTCCGCAAGAGAATGGTTCCTCCGTTGCCTGACACGTGTGTAGGGAACATGGTTTGGTTCTTTTTCGTGTTGAACCCGAGGGAAACCGAACTACATGAGTTGGTAAGGAAAATGAAAGAAGGATTGTATGAATTTTGTGATGTGTTTGTGAAGAAATTTGGAGGGAATAATAAGGACTTGTCATTCATCTCCGAGTGCTTGAAACAAGCTTGTAAGGAGGAGGAGGAGAAGCAAAGTTTGTTTATTTATGCGAGTTGGTGCAGGTTCCCAATGTATGAAGCGGATTTTGGGTGGGGGAAACCGATATGGGTGACCACTAGTGGGTTTCCAGTGAGGAATGGGATAGTTTTGATGGATACAAGAGATGGTAAAGGGATTGAAGCGGTTGTGAGTATGGAAGAGGAAGATATGGCTAGTTTTGAACGTGATGTGGAGCTCCTTCAATTTGCTTCTCTTAATCCAAACCGTGAGACATGTTAA 1383 0.4288 MDTKSGNGIEALVNMEEQDLGTMELELVSRETIKPSIPTLPHLKIYPLSFIDHIVFRNYIPSLFFYSPPNNTTHDQTSKISDLKKSLSQVLSRYYPFAGRLRDQLSIECNDQGVSFLVATIKGINLSTILHNPTEALLNPLFPDELQWKVMDPSESIIAIQINCFPCGGIAISVCMCHKVADAATLFNFVNDWATINRKKENEKEKELLVLLPFPSLDGGVSLFPQEDLPIYPEVVFGKDKTVCRRFVFQASKIESLKAMVSSHALQNPTRVGVVTAWIYKRAVSALGLKFKTTSLRIAVNLRKRMVPPLPDTCVGNMVWFFFVLNPRETELHELVRKMKEGLYEFCDVFVKKFGGNNKDLSFISECLKQACKEEEEKQSLFIYASWCRFPMYEADFGWGKPIWVTTSGFPVRNGIVLMDTRDGKGIEAVVSMEEEDMASFERDVELLQFASLNPNRETC. 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05666 460 PANTHER F21J9.9 26 452 - -
Seca12g05666 460 Gene3D - 239 451 IPR023213 -
Seca12g05666 460 Gene3D - 22 231 IPR023213 -
Seca12g05666 460 Pfam Transferase family 24 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05666 Seca-Chr12 148199956 148207297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05666 49 443 Monolignol Biosynthesis Gene Families AT5G48930 24.823 3.09e-26 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05666 - - gmx:100806928 608.601