Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05660 ATGATACATAGGTCTCTTATCTCTGAAAACATGGATAATGGTTGCTTCCTTTCTCCACGCCTTGATGCTTTTCCAGCTGGTTTGCGAGTTCTTGTTGTTGATGATGATCCAACCTGGCTGAGGATCCTTGAAAAGATGCTTAAGAAGTGCTTTTATGAAGTGACTACATGTTGTTTAGCAACAGAGGCTCTAAAAAAGCTTCGTGAAAGGAAAGATGCATATGACATAGTGATCAGTGATGTAAACATGCCTGACATGGATGGTTTCAAGCTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCAGTTATCATGATGTCTGTGGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACATGGAGCATGTGATTACCTCCTTAAGCCAATAAGGATGAAAGAACTTCGAAATATATGGCAACATGTCTTTAGAAAAAGAATACATGAGGCAAGAGAATTTGAAAGTCATGAGGGTTTTGAGGGTATTCACTTTATGAGAAATGGATCAGATCACTCTGATGATGGTAACCAGTTTTCTGTGGAAGAAATTACCTCAATAAAGAAAAGGAAAAATATAGATAACAATCATGATGACAAAGAATTTGGAGATCAATCTTCAACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCATCAGAAGTTTGTTAAAGCAGTGGATGAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTAGATTTGATGAATGTTCCTGGGCTAACTAGAGAAAATGTTGCCAGTCATTTACAGAAATACCGGCTCTACTTGAGTAGGTTGCAAAAGGAAAATGATCAGAAATCTTCCTCAAAAGGAATGAAGCATCCGGATTTACCTTCAAAAGATCCAGGAAATTTCCCTTCAAAAGATCCAGGAAGTTTTAGTTTTTTGAATTCTACAAACAAGCAACAAAATGATGTTGCAATTGACAGCATCAGATATTCAGATGGAACATTGCAACTTCAGATGGATGCTACAAGTCATGAAGCTGATCTCAAGGGAATTGTCTCAGAGCTTACAACAGAAAAAAGATCTTTGACCATTGACATTCCTGACCAAAAGATAGGAAATAGTTCACAGTTGGGCCTTAATCAACCTTTTGCATTTGTAGAGTCAGAAGCAAACCATGCAGTATTAGATAGCACCATACCAACACAGTACTCTTGGAATGAAGTTCCAAAAAGGCCAATTAAAGAAGAACAAAAGACACTTGTTCAATTAAAGGATTGCTTCAGCCAGTTGCCATTACATGGTACACAGCATCACATTGAGCCTGATCAATCACAATCAATTGCTTCAATTATTTCCAATCCTTCTGTAACACAAGAGGTTGCTGCCTGTTCAGAAACCAAACCTTTGTATGCTGACTACAAAAGTGATTATGTCAGTCCTGTGAATTCAATAGGGTCTGCAGTTGAAACCTTTCCTATTCAGTCCAAAAGCCTTATGGTAAATGATCAATCTCCAGAGTCCATTTTCACTACAAACTTGGGCTTGAAAACACAGGGATTTGATCTTGGTTGCATTTCTGATATGGAATTTTACCAAAGGAACCTACTTTTGGGTGATGAGGCAGTTTCTGCACCATTGGAGGAGGACTTACAATTCTTTTTGCTGCAAGGTGAATACTATAATATGGACTTTGGCTTGCAGAATATAGAGATGTCAGAGTATTATGATCCAAGGCTTATTGCTGAAGTTCCTACCCACTTATATGATTCAGGAGATTATTCAGTATTAGATAAAAGTCTATTCATAGCATGA 1788 0.3786 MIHRSLISENMDNGCFLSPRLDAFPAGLRVLVVDDDPTWLRILEKMLKKCFYEVTTCCLATEALKKLRERKDAYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESHEGFEGIHFMRNGSDHSDDGNQFSVEEITSIKKRKNIDNNHDDKEFGDQSSTKKARVVWSVDLHQKFVKAVDEIGFDKVGPKKILDLMNVPGLTRENVASHLQKYRLYLSRLQKENDQKSSSKGMKHPDLPSKDPGNFPSKDPGSFSFLNSTNKQQNDVAIDSIRYSDGTLQLQMDATSHEADLKGIVSELTTEKRSLTIDIPDQKIGNSSQLGLNQPFAFVESEANHAVLDSTIPTQYSWNEVPKRPIKEEQKTLVQLKDCFSQLPLHGTQHHIEPDQSQSIASIISNPSVTQEVAACSETKPLYADYKSDYVSPVNSIGSAVETFPIQSKSLMVNDQSPESIFTTNLGLKTQGFDLGCISDMEFYQRNLLLGDEAVSAPLEEDLQFFLLQGEYYNMDFGLQNIEMSEYYDPRLIAEVPTHLYDSGDYSVLDKSLFIA. 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05660 595 Gene3D - 28 177 - -
Seca12g05660 595 MobiDBLite consensus disorder prediction 270 286 - -
Seca12g05660 595 ProSiteProfiles Response regulatory domain profile. 29 144 IPR001789 GO:0000160
Seca12g05660 595 Pfam Myb-like DNA-binding domain 212 262 IPR001005 -
Seca12g05660 595 FunFam Two-component response regulator 206 269 - -
Seca12g05660 595 Pfam Response regulator receiver domain 30 139 IPR001789 GO:0000160
Seca12g05660 595 SMART REC_2 28 140 IPR001789 GO:0000160
Seca12g05660 595 SUPERFAMILY CheY-like 27 153 IPR011006 -
Seca12g05660 595 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 314 IPR045279 GO:0009736
Seca12g05660 595 CDD REC_typeB_ARR-like 30 144 - -
Seca12g05660 595 Gene3D - 206 269 - -
Seca12g05660 595 NCBIfam myb-like DNA-binding domain, SHAQKYF class 210 263 IPR006447 GO:0003677
Seca12g05660 595 SUPERFAMILY Homeodomain-like 208 267 IPR009057 -
Seca12g05660 595 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 266 IPR017930 -
Seca12g05660 595 MobiDBLite consensus disorder prediction 270 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05660 Seca-Chr12 148155894 148160601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05660 21 276 Response Regulator Gene Family AT2G25180 53.876 8.65e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Seca12g05660 Response_reg 2.7e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05660 K14491 - gmx:100778324 944.495