Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05657 ATGGGCCGACGTAAGATTGAGATTGCAATCGTGAAGGACCCAAACACAAGGCAAGTCACATTCTCGAAGCGTCGAACGGGCTTATTCAAAAAAGCAAATGAGTTATCCGTTTTGTGTGGTGCTGAAGTTGCTATTGTTGTGTTTTCACCTGGGAACAAGCCTTATTCTTTTGGGCACCCAGGTGTTGATGTTGTTGCTGACAAGTTTCTCCAACAACATGAGCCCAAATCAAATGATGATGATGTCCAAGGTAGCAACCCTTCTGTGGACAAGTTGAATCTCAAACTTGCTGATTTGATGGCCCAAATTGGTGAGGGTGAAAAAAAGGCTGAAGAGTTTGATGAGACCCTGAAACAATATGATGTGACCCAACTCAATGTTGATGAACTTAAGGAATTGCAAGGTTCCTATTTAGGGCTCAAACGTAGGGTGAAGGAATATTTGACTGAAATTGAGGTGGCGGAATGTATGTTGCTCCTTGCAAAGAAACCTGTGGAGGGAATAACAAATCAAGTTGCCAAAAGGAGAAGAAGAATGGTTTGA 543 0.4254 MGRRKIEIAIVKDPNTRQVTFSKRRTGLFKKANELSVLCGAEVAIVVFSPGNKPYSFGHPGVDVVADKFLQQHEPKSNDDDVQGSNPSVDKLNLKLADLMAQIGEGEKKAEEFDETLKQYDVTQLNVDELKELQGSYLGLKRRVKEYLTEIEVAECMLLLAKKPVEGITNQVAKRRRRMV. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05657 180 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca12g05657 180 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Seca12g05657 180 Coils Coil 89 109 - -
Seca12g05657 180 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca12g05657 180 SUPERFAMILY SRF-like 1 77 IPR036879 GO:0003677|GO:0046983
Seca12g05657 180 CDD MADS_MEF2_like 2 74 IPR033896 GO:0000977|GO:0045944
Seca12g05657 180 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca12g05657 180 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca12g05657 180 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca12g05657 180 PANTHER MADS BOX PROTEIN 3 135 - -
Seca12g05657 180 Coils Coil 130 150 - -
Seca12g05657 180 Gene3D - 14 82 IPR036879 GO:0003677|GO:0046983
Seca12g05657 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05657 Seca-Chr12 148115767 148116309 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05657 1 163 Type I MADS-box Gene Family AT2G34440 42.529 1.41e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca12g05657 SRF-TF 1.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05657 - - gmx:100791127 227.254