Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05650 ATGCCTTCATCAGTGTTGTCCAGTGATAGCATGCACTTGGGGCTTCTTGCTGCTGCAGCTCATGCAGCTGCAACAAATAGTCGTTTCACCATTTTCTATAACCCACGTGCTAGCCCATCAGAATTTGTCATACCCTTAGCAAAATATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGCTTCAGGATGCTATTTGAAACAGAGGAATCTAGTGTGCGGCGATACATGGGAACGATAACTGGCATCAGTGACTTGGATTCTGTCCGGTGGCCAAATTCACATTGGCGCTCAGTCAAGGTTGGCTGGGATGAATCCACAGCAGGTGAGAGGCAACCTCGAGTCTCTCTATGGGAAATTGAACCATTAACAACATTTCCAATGTATCCGTCTCCATTTCCCCTTAGGCTTAAAAGACCATGGCCTCCAGGACTGCCTTCATTCCCTGGTTTGAAGGATGATGATTTTGGCATAAATCCTTCTCTAATGTGGCTTCGGGACACAGATAGAGGGCTTCAGTCTCTTAATTTTCAGGGGATTGGTGTTGGTCCTTGGATGCAGCCAAGGCTTGATCCCTCCATGGTGAATTTGCAAACAGATATGTACCAAGCTATGGCTGCTGCTGCACTTCAGGATGTGAGGACTTTAGATCCTTCAAAACAGCATCCTGCTTCCTTTCTTCAATTTCAGCAACCGCAGAACTTCCCCAACAGGACCGCTGCTTTAATGCAGAACCAGATATTGCAGCAGTCTCAACCTCAGCAGGCTTTTCCAAATAATCAAGAAAATCAGCATCCATCTCAATCTCAGGCTCAAACTCAAACACATTTCCAGCAGCATCTACAGCATCAGCATTCATTCAATAATCAGAATCATCATCATCTGCAGCAACAGCAACAGCAACAACTGCAACATCAGCAACAGCAACAGCAAGTTGTAGATCATCAGCAGATTTCAAGTGCAGTCTCTACAATGTCTCAGTTTGTTTCGGCACCTCAATCTCAATCACCACCCATGCATGCTATCTCTTCACTGGGCCATCAGCAAAGTTTTTCTGATTCAAATGGGAACCCTGTAACTTCTGCTATTGTTTCTCCCTTGCACAGTATGTTGGGTTCATTCCCCCATGATGAAACATCTCAACTTCTCAACCTTCCTAGAACAAGCTCTTGGGTTCCTGTTCAATCTTCAACTACATGGCCCTCCAAGCGTGTTGCAGTGGATCCTCTCCTTTCTTCTGGAGCATCTCAATGTGTTCTGCCTCAAATAGAGCAGCTAGGTCAGCCACAGAGTACCATGTCTCAAAATGCTATTAGCTTGCCACCATTTCCTGGTAGGGAGTGCACAATAGAAGGGAGCACTGATCCACAAAACCATCTTTTGTTTGGTGTTAATATAGAGCCCTCATCACTTCTAGTGCATAATGGGATGACAAGCCTTAAGGGGGTCAGCAGCAACAGTGACTCATCAACCATACCTTTCCAATCTTCTAATTACCTGAATACCACAGGCACTGATTCTTCATTGAATCATGGAATGACACAAAGTGTTGGTGAATCAGGCTTCCTGCAAACTCCAGAAAATGGAAGCCAAGGAAACCCATCAACCAAAACCTTTGTGAAGGTTTACAAATCAGGGTCCTTTGGAAGATCGTTGGATATCACGAAATTCTCCAACTACCACGAACTACGCAGTGAGCTTGCTCGTATGTTTGGCCTTGAAGGTGAGTTGGAGGACCCTGTGAGATCAGGCTGGCAGCTTGTATTCGTTGACCAAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTTGTAAATAGTGTTTGGTGCATCAAGATACTTTCCCCTCAGGAAGTGCAGCAAATGGGCAACAATGGCCTGGGGCTTCTGAACTCAGTTCCAAATCAGAGGCTCTCTAATGGCATCTGTGATGACTATACAGGCCGTGAAGACTCAAGAAATTTAAGCACTGGGATAACAGCTGTGGGGTCTTTAGACTACTGA 2019 0.4547 MPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFPGLKDDDFGINPSLMWLRDTDRGLQSLNFQGIGVGPWMQPRLDPSMVNLQTDMYQAMAAAALQDVRTLDPSKQHPASFLQFQQPQNFPNRTAALMQNQILQQSQPQQAFPNNQENQHPSQSQAQTQTHFQQHLQHQHSFNNQNHHHLQQQQQQQLQHQQQQQQVVDHQQISSAVSTMSQFVSAPQSQSPPMHAISSLGHQQSFSDSNGNPVTSAIVSPLHSMLGSFPHDETSQLLNLPRTSSWVPVQSSTTWPSKRVAVDPLLSSGASQCVLPQIEQLGQPQSTMSQNAISLPPFPGRECTIEGSTDPQNHLLFGVNIEPSSLLVHNGMTSLKGVSSNSDSSTIPFQSSNYLNTTGTDSSLNHGMTQSVGESGFLQTPENGSQGNPSTKTFVKVYKSGSFGRSLDITKFSNYHELRSELARMFGLEGELEDPVRSGWQLVFVDQENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNNGLGLLNSVPNQRLSNGICDDYTGREDSRNLSTGITAVGSLDY. 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05650 672 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 628 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca12g05650 672 Gene3D - 535 628 - -
Seca12g05650 672 Gene3D - 57 129 - -
Seca12g05650 672 ProSiteProfiles PB1 domain profile. 539 623 IPR000270 GO:0005515
Seca12g05650 672 SUPERFAMILY CAD & PB1 domains 532 614 - -
Seca12g05650 672 MobiDBLite consensus disorder prediction 252 361 - -
Seca12g05650 672 FunFam Auxin response factor 57 129 - -
Seca12g05650 672 Pfam Auxin response factor 19 102 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca12g05650 672 FunFam Auxin response factor 534 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05650 Seca-Chr12 147990387 147994486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05650 1 249 B3 DNA Binding Superfamily AT1G30330 81.349 1.79e-126 395