LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g05639	ATGACGTCACGTTGGGGGCTTGGTAGCAGCAGCAGGACCAGTGTGGGAAAATATGAATTGGGTCGGACCCTGGGTGAGGGGGGCTTCGCCAAGGTGAAGTTTGCAAGGAACACTGAGTCCGGAGAGAGTGTGGCCATCAAAATTCTTGACAAACAAAAAATTCTCAAGCACAAAATGATAGGCCAGATCAAACGAGAAATATCAACGATGAAACTAATTAGACACCCAAATGTCATACATATGTATGAGGTGATGGCTAGCAGGACAAAGATATACATTGTATTGGAACTTGTGACTGGTGGAGAACTGTTTGATAAAATTGCAAACCATGGGAGACTGAAAGAAGATGAAGGAAGAAAATATTTTCAGCATCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTTCCATAGGGACTTAAAGCCGGAGAATTTGTTACTGGATGCTGATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCACTACCTCAACAAGTTCGAGAAGATGGGCTACTTCACACAAAATGTGGTACGCCAAATTATGTTGCCCCTGAGGTGATCCACGACAAAGGCTATGATGGGGCAAAGGCTGATCTGTGGTCATGTGGTGTTATTCTTTTTGTTTTAATGTCTGGTTATTTGCCCTTTGACGATAACAACCTTGTGGCTTTATATAAAAAGATTTCCAAGGCTGAGTTTACTTGTCCTTCATGGTTTTCTTCAAGTGCAAAGAAACTAATCAAGAGAATATTGGATCCCAATCCTGCAACACGGATCACAATTGCTGAGGTCATTGAGAATGAGTGGTTCAAGAAGGGGTATGTGCTGCCTCCTAGATTTTCAGAGGCCAATGTTAGTCTTGATGATGTAAATGCTATTTTCAGTAAAGCAGATGATTCACAAAATCTTATTGTGGAGAGGCGAGAAGAAGGGCCTGTTGCACCTATGACTATGAATGCCTTTGAGCTTATCTTTAAGTCTCAGGGCCTCAACCTTGGAAATCTTTTTGGGAAACAGATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCAACAGATGAGATAATTTCAAAAATTGAGCAGGCTGCATTGCCTCTGGGTTTTAGTGTTAAGAAGAACAACTATAAGGTGAAGATTCAAGGGGAAAAGACTGGACGTAAAGGTCATCTATCAATAGTCACTGAGATCTTTGAGGTGGCCCCTTCACTTAACATGGTTGAGCTTCGGAAGTCTGGGGGAGATACTCTGGAATTTTATAAGTTCTACAAGAATCTATCTAATGGGCTAAGAGATATAATTTGGAAAGCAGAGCCAATCGATGAAGAAACAAATGGTGCTAGTACATCAACATAA	1371	0.4099	MTSRWGLGSSSRTSVGKYELGRTLGEGGFAKVKFARNTESGESVAIKILDKQKILKHKMIGQIKREISTMKLIRHPNVIHMYEVMASRTKIYIVLELVTGGELFDKIANHGRLKEDEGRKYFQHLICAVDYCHSRGVFHRDLKPENLLLDADGVLKVSDFGLSALPQQVREDGLLHTKCGTPNYVAPEVIHDKGYDGAKADLWSCGVILFVLMSGYLPFDDNNLVALYKKISKAEFTCPSWFSSSAKKLIKRILDPNPATRITIAEVIENEWFKKGYVLPPRFSEANVSLDDVNAIFSKADDSQNLIVERREEGPVAPMTMNAFELIFKSQGLNLGNLFGKQMGLVKRETRFTSKCSTDEIISKIEQAALPLGFSVKKNNYKVKIQGEKTGRKGHLSIVTEIFEVAPSLNMVELRKSGGDTLEFYKFYKNLSNGLRDIIWKAEPIDEETNGASTST.	457

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Seca12g05639	456	Gene3D	Kinase associated domain 1, KA1	316	441	-	-
Seca12g05639	456	ProSitePatterns	Protein kinases ATP-binding region signature.	24	47	IPR017441	GO:0005524
Seca12g05639	456	Gene3D	Phosphorylase Kinase; domain 1	8	97	-	-
Seca12g05639	456	Pfam	Protein kinase domain	18	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca12g05639	456	SUPERFAMILY	Protein kinase-like (PK-like)	15	285	IPR011009	-
Seca12g05639	456	FunFam	Non-specific serine/threonine protein kinase	9	97	-	-
Seca12g05639	456	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	10	426	-	-
Seca12g05639	456	SMART	serkin_6	18	273	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Seca12g05639	456	Gene3D	Transferase(Phosphotransferase) domain 1	98	278	-	-
Seca12g05639	456	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	137	149	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g05639	Seca-Chr12	147860156	147865842	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g05639	3	448	CBL-interacting serine-threonine protein kinases	AT1G01140	66.593	0.0	637

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Seca12g05639		Pkinase	1.4e-72	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g05639	-		-	gmx:100788746	754.977

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