Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05639 ATGACGTCACGTTGGGGGCTTGGTAGCAGCAGCAGGACCAGTGTGGGAAAATATGAATTGGGTCGGACCCTGGGTGAGGGGGGCTTCGCCAAGGTGAAGTTTGCAAGGAACACTGAGTCCGGAGAGAGTGTGGCCATCAAAATTCTTGACAAACAAAAAATTCTCAAGCACAAAATGATAGGCCAGATCAAACGAGAAATATCAACGATGAAACTAATTAGACACCCAAATGTCATACATATGTATGAGGTGATGGCTAGCAGGACAAAGATATACATTGTATTGGAACTTGTGACTGGTGGAGAACTGTTTGATAAAATTGCAAACCATGGGAGACTGAAAGAAGATGAAGGAAGAAAATATTTTCAGCATCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTTCCATAGGGACTTAAAGCCGGAGAATTTGTTACTGGATGCTGATGGAGTGCTTAAAGTATCAGATTTTGGATTGAGTGCACTACCTCAACAAGTTCGAGAAGATGGGCTACTTCACACAAAATGTGGTACGCCAAATTATGTTGCCCCTGAGGTGATCCACGACAAAGGCTATGATGGGGCAAAGGCTGATCTGTGGTCATGTGGTGTTATTCTTTTTGTTTTAATGTCTGGTTATTTGCCCTTTGACGATAACAACCTTGTGGCTTTATATAAAAAGATTTCCAAGGCTGAGTTTACTTGTCCTTCATGGTTTTCTTCAAGTGCAAAGAAACTAATCAAGAGAATATTGGATCCCAATCCTGCAACACGGATCACAATTGCTGAGGTCATTGAGAATGAGTGGTTCAAGAAGGGGTATGTGCTGCCTCCTAGATTTTCAGAGGCCAATGTTAGTCTTGATGATGTAAATGCTATTTTCAGTAAAGCAGATGATTCACAAAATCTTATTGTGGAGAGGCGAGAAGAAGGGCCTGTTGCACCTATGACTATGAATGCCTTTGAGCTTATCTTTAAGTCTCAGGGCCTCAACCTTGGAAATCTTTTTGGGAAACAGATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCAACAGATGAGATAATTTCAAAAATTGAGCAGGCTGCATTGCCTCTGGGTTTTAGTGTTAAGAAGAACAACTATAAGGTGAAGATTCAAGGGGAAAAGACTGGACGTAAAGGTCATCTATCAATAGTCACTGAGATCTTTGAGGTGGCCCCTTCACTTAACATGGTTGAGCTTCGGAAGTCTGGGGGAGATACTCTGGAATTTTATAAGTTCTACAAGAATCTATCTAATGGGCTAAGAGATATAATTTGGAAAGCAGAGCCAATCGATGAAGAAACAAATGGTGCTAGTACATCAACATAA 1371 0.4099 MTSRWGLGSSSRTSVGKYELGRTLGEGGFAKVKFARNTESGESVAIKILDKQKILKHKMIGQIKREISTMKLIRHPNVIHMYEVMASRTKIYIVLELVTGGELFDKIANHGRLKEDEGRKYFQHLICAVDYCHSRGVFHRDLKPENLLLDADGVLKVSDFGLSALPQQVREDGLLHTKCGTPNYVAPEVIHDKGYDGAKADLWSCGVILFVLMSGYLPFDDNNLVALYKKISKAEFTCPSWFSSSAKKLIKRILDPNPATRITIAEVIENEWFKKGYVLPPRFSEANVSLDDVNAIFSKADDSQNLIVERREEGPVAPMTMNAFELIFKSQGLNLGNLFGKQMGLVKRETRFTSKCSTDEIISKIEQAALPLGFSVKKNNYKVKIQGEKTGRKGHLSIVTEIFEVAPSLNMVELRKSGGDTLEFYKFYKNLSNGLRDIIWKAEPIDEETNGASTST. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05639 456 Gene3D Kinase associated domain 1, KA1 316 441 - -
Seca12g05639 456 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Seca12g05639 456 Gene3D Phosphorylase Kinase; domain 1 8 97 - -
Seca12g05639 456 Pfam Protein kinase domain 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05639 456 SUPERFAMILY Protein kinase-like (PK-like) 15 285 IPR011009 -
Seca12g05639 456 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Seca12g05639 456 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 426 - -
Seca12g05639 456 SMART serkin_6 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05639 456 Gene3D Transferase(Phosphotransferase) domain 1 98 278 - -
Seca12g05639 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Seca12g05639 456 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165
Seca12g05639 456 FunFam Non-specific serine/threonine protein kinase 11 314 - -
Seca12g05639 456 Pfam NAF domain 318 378 IPR004041 GO:0007165
Seca12g05639 456 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05639 456 CDD CIPK_C 322 432 - -
Seca12g05639 456 CDD STKc_SnRK3 17 272 - -
Seca12g05639 456 FunFam Non-specific serine/threonine protein kinase 315 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05639 Seca-Chr12 147860156 147865842 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05639 3 448 CBL-interacting serine-threonine protein kinases AT1G01140 66.593 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca12g05639 Pkinase 1.4e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05639 - - gmx:100788746 754.977