Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05638 ATGACGTCACGTGGTAGCAGCAGTGGGAGTAGCCGTGTCCGTGTGGGAAAATATGAAATAGGTCGGACCCTGGGTGAGGGAAACTTTGCTAAGGTGAAGTTTGCACGCAACACTGAGACCGGAGAGAATGTGGCCATCAAAGTTCTTGACAAACAAAAAATTCTCAAGCACAATATGACAGCCCAGATAAAACGAGAAATAACAACAATGAAACTAATTAGACATCCGAATGTTATACATATGTATGAGGTGATGGCTAGCAAAACAAAGATATACATTGTAATGGAACTTGTGACTGATGGCCATCTGTTCGATAAAATTGCAAGTCACGGGAGACTGAAAGAAGATGAAGCAAGAAAATATTTTCAGCATCTTATTTGTGCTGTGGATTACTGTCACAGTAGAGGTGTTTTTCATAGAGACTTAAAGCCAGAGAATTTGTTGTTGGATTCTAATGGAGTGCTTAAAGTATCAGATTTTGGATTAAGTGCACTACCTCAACAAGTTCGAGAAGATGGGCTACTTCACACAACATGTGGTACGCCAAATTATATTGCCCCTGAGGTGATCCAGGACAAAGGCTATGATGGTGCAAAGGCTGATCTCTGGTCATGTGGTGTTATTCTTTTTATTTTAATGGCTGGCTACTTGCCCTTTGAAGATAACAATCTTATGGCTTTATATAAAAAGATTTTCAAGGCTGAGTTCACTTGTCCTCCATGGTTTTCTTCAAAATCAAAGAAACTAATCAATAGAATCCTTGATCCCAATCCTGCTAAACGGATTACAATTGCTGAAGTCATTGAGAATGAGTGGTTCAAGAAGGGGTATGTGCCTCCTAGATTTTCAGAGGTCAATGTTAGTCTTGATGATGTACACGCTATTTTCAGTGAAGCAGAAGATTCACAAAATCTAGTTGTGGAAAGTCGAGAAGAGAGACCTGTTGCACCTGTGACTATGAATGCCTTTGAGCTTATCTTCACATCTCAGGGCCTCAACCTTGGAAATCTTTTCGAGAAGCAGATGGGACTTGTTAAAAGGGAAACAAGATTCACATCCAAATGTTCCGCAGATGAGATAATTTCAAAAATTGAGGAAGCTGCAATGCCTTTGGGTTTTAGTGTTAAGAAGAACAACTATAAGGTGAAGATTCAAGGGGAAAAGACTGGACGTAAAGGTCATGTATCAATAGTCACAGAGATATTTGAGGTGGCCCCTTCAGTTAACATGGTTGAGCTTCGAAAGTCTGGAGGAGATACTCTGGAATTTTACAAGGTGTACAAGAATCTATCTAGTGGGCTGAAAGATATCATTTGGAAAGCAGAGCCAACCGATGAAGGAACAGATGGCTAG 1353 0.4028 MTSRGSSSGSSRVRVGKYEIGRTLGEGNFAKVKFARNTETGENVAIKVLDKQKILKHNMTAQIKREITTMKLIRHPNVIHMYEVMASKTKIYIVMELVTDGHLFDKIASHGRLKEDEARKYFQHLICAVDYCHSRGVFHRDLKPENLLLDSNGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYIAPEVIQDKGYDGAKADLWSCGVILFILMAGYLPFEDNNLMALYKKIFKAEFTCPPWFSSKSKKLINRILDPNPAKRITIAEVIENEWFKKGYVPPRFSEVNVSLDDVHAIFSEAEDSQNLVVESREERPVAPVTMNAFELIFTSQGLNLGNLFEKQMGLVKRETRFTSKCSADEIISKIEEAAMPLGFSVKKNNYKVKIQGEKTGRKGHVSIVTEIFEVAPSVNMVELRKSGGDTLEFYKVYKNLSSGLKDIIWKAEPTDEGTDG. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05638 450 SMART serkin_6 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05638 450 Gene3D Transferase(Phosphotransferase) domain 1 98 278 - -
Seca12g05638 450 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Seca12g05638 450 ProSiteProfiles Protein kinase domain profile. 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05638 450 ProSiteProfiles NAF domain profile. 315 339 IPR018451 GO:0007165
Seca12g05638 450 FunFam Non-specific serine/threonine protein kinase 11 313 - -
Seca12g05638 450 Gene3D Kinase associated domain 1, KA1 315 440 - -
Seca12g05638 450 Gene3D Phosphorylase Kinase; domain 1 7 97 - -
Seca12g05638 450 FunFam Non-specific serine/threonine protein kinase 314 440 - -
Seca12g05638 450 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Seca12g05638 450 Pfam Protein kinase domain 18 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05638 450 SUPERFAMILY Protein kinase-like (PK-like) 14 292 IPR011009 -
Seca12g05638 450 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 425 - -
Seca12g05638 450 Pfam NAF domain 317 377 IPR004041 GO:0007165
Seca12g05638 450 CDD CIPK_C 321 436 - -
Seca12g05638 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672|GO:0006468
Seca12g05638 450 CDD STKc_SnRK3 17 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05638 Seca-Chr12 147854463 147858870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05638 3 446 CBL-interacting serine-threonine protein kinases AT1G01140 66.444 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca12g05638 Pkinase 6.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05638 - - gmx:100788746 751.125