Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05637 ATGGGGGAAGAAAAGCAACGCAGCATACCGGCTTTGCCATGGATGCGAGACCCTGTTGACGTCACTCGCTGTCAAGAACTATCCCTTGATTCCGTTCCTTGCCTCAATCCTAAGTTAAAATCAGCATTAGAGGACATGGGAATCTCGAACCTGTTCCCCGTTCAAGTCGCCGTTTGGCAAGAGACGGTTGGGCCTGGCAACTTCGAGCGAGACATTTGCGTTAACTCACCCACCGGAAGCGGCAAAACCTTGGCATACGCTCTCCCTATTGTGCAGTTGCTATCGAAGCGCGTCACCAAATGCCTACGCGCCTTGGTCGTGGTTCCCACGCGCGACCTCGCTTTGCAGGTTAAACGAGTCTTCGACGCCGTTGCGTCTCCGCTCGGCTTGCGCGTTGGCTTGGCCGTCGGTCAGTCTTCGGTCGCCGACGAGATTAATGAGCTCGTCGAGGTGCCGGCACGTGAGGCTGGCATGTGCTATGATCCTCAACACGTTTTGCTTCCTCGGTTTCAGAGTAAGGTCGATATATTGGTAGCAACCCCTGGAAGGCTCATGGATCACATCAATACTACTAAAGGTTTCACGCTTGAGCATCTTTATTATCTCGTGGTTGATGAAACAGATAGACTGCTACGAGAGGCCTACCAGTCCTGGCTGCCTACTGTGCTTGAATTGACCCAATCTAATGATGATAATTATTTTCAACCTGCTGATTCTTTTCTCCCTTGTTCTCTTGGTGCATTAAGAACCAGAAGAAGATGTGGAGTAGAGAGGGGGTTCAAGGATAAGCCTTACCCTAGGCTGGCAAAGATGGTTCTATCTGCAACATTAACTCAGGATCCAGGAAGGCTTGTTCAGCTTAATTTGCATCACCCTTTATTCCTGAGAGCTGGGAAAACACGTTATCGGCTCCCAGAAAATTTGGAATCTTACAAACTTTTATGTGAAAGAAAGGTCAAACCCTTGTATTTGGTTGCCCTTTTGAAATCCCTGGGAGAAGAAAAATGCATAGTTTTTACAAAATCTGTGGATTCAACACATCGTCTCTGCAAATTGCTGAATTGTTTTGGAGATCTGCAAATCAATATCAAAGAGTATTCTGGTCTTCAACATCAACGTGTAAGAAGTAAGACATTGAATGACTTTCGGAAAGGGGAGTTTCAAGTGCTTGTATCTTCTGATGCAATGACTCGTGGAATGGATGTTGAAGGGGTAAGAAATGTCATTAATTATGACATGCCCAAATACATAAAAACTTATGTTCATCGGGCTGGTAGGACTGCAAGAGCTGGCCACACTGGGCGTTGCTTCACATTGATGTCAAAAGATGAGGTATGA 1338 0.4664 MGEEKQRSIPALPWMRDPVDVTRCQELSLDSVPCLNPKLKSALEDMGISNLFPVQVAVWQETVGPGNFERDICVNSPTGSGKTLAYALPIVQLLSKRVTKCLRALVVVPTRDLALQVKRVFDAVASPLGLRVGLAVGQSSVADEINELVEVPAREAGMCYDPQHVLLPRFQSKVDILVATPGRLMDHINTTKGFTLEHLYYLVVDETDRLLREAYQSWLPTVLELTQSNDDNYFQPADSFLPCSLGALRTRRRCGVERGFKDKPYPRLAKMVLSATLTQDPGRLVQLNLHHPLFLRAGKTRYRLPENLESYKLLCERKVKPLYLVALLKSLGEEKCIVFTKSVDSTHRLCKLLNCFGDLQINIKEYSGLQHQRVRSKTLNDFRKGEFQVLVSSDAMTRGMDVEGVRNVINYDMPKYIKTYVHRAGRTARAGHTGRCFTLMSKDEV. 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05637 445 PANTHER RNA HELICASE 35 444 - -
Seca12g05637 445 FunFam ATP-dependent RNA helicase DDX51 16 298 - -
Seca12g05637 445 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 445 IPR001650 -
Seca12g05637 445 Gene3D - 307 445 IPR027417 -
Seca12g05637 445 SMART helicmild6 347 431 IPR001650 -
Seca12g05637 445 CDD SF2_C_DEAD 308 439 - -
Seca12g05637 445 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 295 IPR014001 -
Seca12g05637 445 Pfam Helicase conserved C-terminal domain 320 431 IPR001650 -
Seca12g05637 445 SMART ultradead3 47 311 IPR014001 -
Seca12g05637 445 Gene3D - 16 298 IPR027417 -
Seca12g05637 445 CDD DEADc_DDX51 39 295 - -
Seca12g05637 445 Pfam DEAD/DEAH box helicase 53 281 IPR011545 GO:0003676|GO:0005524
Seca12g05637 445 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 102 444 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05637 Seca-Chr12 147847333 147853814 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05637 57 444 Eukaryotic Initiation Factors Gene Family AT3G13920 23.737 2.49e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05637 K14807 - cit:102616133 680.248