Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05620 ATGGCCTTGCAGAACATTGGTGCCAGCAATAGCGATGATGCCTTCTACAGGTATAAGATGCCTAAAATGATTACCAAAATTGAGGGTAGAGGTAATGGCATCAAAACAAATATTGTCAACATGGTTGATATTGCAAAAGCGTTGGCAAGGCCAGCCTCCTACACAACAAAGTATTTTGGCTGTGAACTTGGAGCCCAATCAAAATTTGATGAGAAAACTGGGACTTCTCATGTTAATGGAGCACATGATACTGCAAAACTTGCTGGTCTTCTAGAGAACTTCATCAAGAAATACGTCCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGATCATAATTACTAAGAATCAAATGATCCAGCTGAAATGTGCAGCTTGTGGTTTTGTGTCTTATGTGGATATGAGAGACAAGCTGACTACTTTCATCATTAAGAACCCTCCTGAAATCAAGAAAGGATCCAAAGACAAGAAGGCCATGCGAAGAGCTGAGAAAGAGAGACTGAAGGAAGGTGAAGCAGCTGATGAGGAGCTGAAAAAATTGAAGAAAGAGAGTAAGAAGAAAGGCACTACGTCTTCTAAGGACGTCGCCACAAAATCTACCTCTTCAAGGAAAAAAGCAAATGGCTCTGATGAAGACCGCACATCTCCTACTCATAGTCAAATTGATGAGAAGGATGAGGCTCAAGATGCAGAAGATGATGATGATGACGTACAATGGCAAACAGATACATCACTAGAGGCTGCTAAACAACGTATCCAAGAACAGTTAAGTGCTGTGACAGCTGATATAGTCATGCTCTCCACTAATGAACCAGAGAAGAAGGAGAAAGCACAAGCAGCAAATAAGGTAAGTAATAATTCTGAGAATGGTAACTCCATGCACTGCAGGACTCTGGTTGAGGATGTCAAAGCAAATTTGAAGAAAGGTGCTACAGCAAAAGAATTGCTGACCCATCTGGGAACACTTACTGGATCTGCTCAAGAAAAGATGAGTGCTCTGTATGAAGCTCTTTTTGAGGGCATTGAGAAAGGGTTTGGAAAAGAAGCTCTCAAGAAGAAGAGCTACCTTGCTGCTGCAGTTGCTGAGGATGAGGGAATGCAGTTGTTATTACTGCATGCAATTGAGGAATTTTCTTGCAAGTCTACTACTTCCAATGCATTAAAGGAGGTTGCTCTGGTCTTGAAGGCTCTCTATGATGCGGATGTGTTGGAGGAAGAGCACATAGTACAGTGGTATCAGAAGGGGCTGAAAGGCGATAATAAGAACTCCCAGATTTGGAAGAATGCTCAACCTTTCATTGATTGGCTTCAGAATGCGGAATCAGAATCAGAGGAAGAATGA 1341 0.4191 MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKNQMIQLKCAACGFVSYVDMRDKLTTFIIKNPPEIKKGSKDKKAMRRAEKERLKEGEAADEELKKLKKESKKKGTTSSKDVATKSTSSRKKANGSDEDRTSPTHSQIDEKDEAQDAEDDDDDVQWQTDTSLEAAKQRIQEQLSAVTADIVMLSTNEPEKKEKAQAANKVSNNSENGNSMHCRTLVEDVKANLKKGATAKELLTHLGTLTGSAQEKMSALYEALFEGIEKGFGKEALKKKSYLAAAVAEDEGMQLLLLHAIEEFSCKSTTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKNSQIWKNAQPFIDWLQNAESESEEE. 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05620 446 SMART 542_3 353 442 IPR003307 GO:0005515
Seca12g05620 446 Gene3D - 105 145 - -
Seca12g05620 446 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Seca12g05620 446 FunFam Eukaryotic translation initiation factor 5 291 437 - -
Seca12g05620 446 CDD W2_eIF5 298 444 - -
Seca12g05620 446 Gene3D - 287 446 - -
Seca12g05620 446 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Seca12g05620 446 MobiDBLite consensus disorder prediction 149 225 - -
Seca12g05620 446 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Seca12g05620 446 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Seca12g05620 446 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Seca12g05620 446 ProSiteProfiles W2 domain profile. 285 446 IPR003307 GO:0005515
Seca12g05620 446 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Seca12g05620 446 Pfam eIF4-gamma/eIF5/eIF2-epsilon 367 446 IPR003307 GO:0005515
Seca12g05620 446 MobiDBLite consensus disorder prediction 149 238 - -
Seca12g05620 446 SUPERFAMILY ARM repeat 296 440 IPR016024 -
Seca12g05620 446 Gene3D - 2 104 - -
Seca12g05620 446 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 445 IPR045196 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05620 Seca-Chr12 147557156 147558790 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05620 1 439 Eukaryotic Initiation Factors Gene Family AT1G36730 62.054 4.12e-180 508
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05620 K03262 - gmx:100796346 685.256