Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05617 ATGGCCTTGCAGAACATTGGTGCCAGCAATAGCGATGATGCCTTCTACAGGTATAAGATGCCTAAAATGATTACCAAAATTGAGGGTAGAGGTAATGGCATCAAAACAAATATTGTCAACATGATTGATATTGCAAAAGCGTTGGCAAGGCCAGCCTCCTACACAACAAAGTATTTTGGCTGTGAACTTGGAGCCCAATCAAAATTTGATGAGAAAACTGGGACTTCTCATGTTAATGGGGCACATGATACTGCAAAACTTGCCGGTCTTCTAGAGAACTTCATCAAGAAATACGTCCAGTGTTATGGTTGTGGAAATCCTGAAACTGAGATCATAATTACTAAGAATCAAATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCTGATGTGGATATGAGAGACAAGCTGACTACCTTCATCATTAAGAACCCTCCTGAAATCAAGAAAGGATCCAAAGACAAGAAGGCCATGCGGAGAGCTGAGAAAGAGAGACTGAAGGAAGGTGAAGCAGCTGATGAGGAGCTGAAAAAATTGAAGAAAGAGAGTAAGAAGAAAGGCACTACGTCTTCTAAGGACGGCGCCACAAAATCTACCTCTTCAAGGAAAAAAACAAATGGCTCTGATGAAGACCGCACATCTCCTACTCATAGTCAAATTGATGAGAAGGATGAGGCTCAAGATGCAGAAGATGATGATGATGACGTACAATGGCAAACAGATACATCACTAGAGGCTGCTAAACAACGTATCCAAGAACAGTTAAGTGCTGTGACAGCTGATATGGTCATGCTCTCCACTAATGAACCAGAGAAGAAGGAGAAAGCACAAGCAGCAAATAAGGTAAGTAATAATTCTGAGAATGGTAACTCCATGCACTGCAGGACTCTGGTTGAGGATGTCAAAGCAAATTTGAAGAAAGGTGCTACAGCAGAAGAATTGCTGACCCATCTGGGAACACTTACTGGATCTGCTCAAGAAAAGATGATTGCTCTGTATGAAGCCCTTTTTGAGGGCATTGAGAAAGGGTTTGGAAAAGAAGCTCTCAAGAAGAAGAGCTACCTTGCTGCTGCAGTTGCTGAGGATGAGGGAATGCAGTTGTTATTACTGCGTGCAATTGAGGAATTTTCTTGCAAGTCTACTACGTCCAATGCATTAAAGGAGGTTGCTCTGGTCTTGAAGGCTCTCTATGATGCGGATGTGTTGGAGGAAGAGCACATAGTACAGTGGTATCAGAAGGGACTGAAAGGCGATAATAAGAACTCCCAGATTTGGAAGAATGCTCAACCTTTCATTGATTGGCTTCAGAATGCGGAATCAGAATCGGAGGAAGAATGA 1341 0.4251 MALQNIGASNSDDAFYRYKMPKMITKIEGRGNGIKTNIVNMIDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETEIIITKNQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEIKKGSKDKKAMRRAEKERLKEGEAADEELKKLKKESKKKGTTSSKDGATKSTSSRKKTNGSDEDRTSPTHSQIDEKDEAQDAEDDDDDVQWQTDTSLEAAKQRIQEQLSAVTADMVMLSTNEPEKKEKAQAANKVSNNSENGNSMHCRTLVEDVKANLKKGATAEELLTHLGTLTGSAQEKMIALYEALFEGIEKGFGKEALKKKSYLAAAVAEDEGMQLLLLRAIEEFSCKSTTSNALKEVALVLKALYDADVLEEEHIVQWYQKGLKGDNKNSQIWKNAQPFIDWLQNAESESEEE. 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05617 446 FunFam Eukaryotic translation initiation factor 5 291 437 - -
Seca12g05617 446 MobiDBLite consensus disorder prediction 147 238 - -
Seca12g05617 446 SUPERFAMILY ARM repeat 296 440 IPR016024 -
Seca12g05617 446 SMART 542_3 353 442 IPR003307 GO:0005515
Seca12g05617 446 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 445 IPR045196 GO:0003743|GO:0006413
Seca12g05617 446 Gene3D - 288 446 - -
Seca12g05617 446 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Seca12g05617 446 CDD W2_eIF5 298 444 - -
Seca12g05617 446 ProSiteProfiles W2 domain profile. 285 446 IPR003307 GO:0005515
Seca12g05617 446 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
Seca12g05617 446 Gene3D - 2 104 - -
Seca12g05617 446 MobiDBLite consensus disorder prediction 148 225 - -
Seca12g05617 446 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Seca12g05617 446 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 10 101 IPR016189 GO:0003743|GO:0006413
Seca12g05617 446 Gene3D - 105 145 - -
Seca12g05617 446 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Seca12g05617 446 Pfam eIF4-gamma/eIF5/eIF2-epsilon 367 446 IPR003307 GO:0005515
Seca12g05617 446 FunFam Eukaryotic translation initiation factor 5 105 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05617 Seca-Chr12 147543347 147544984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05617 1 439 Eukaryotic Initiation Factors Gene Family AT1G36730 63.170 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05617 K03262 - gmx:100796346 671.389