Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05614 ATGGAGGAGGATGAGATTCAGGCACAGGCGTGTAAATTCCCTAGAGTTGGAAATGGGAGGAATGAGTCTAACAAGATAGGTCCAAGAGGAGGAGGGAATGAGCAATACCCAGATGAGGAAGAAGATGGAGAGCTCAGAAGAAGAGGTGGTGGAGGAGGAAGTGATGTTAGCACAAACAGGTTCCATGGTTGGCACAACCACTCTTCAAGAATCATTAGAGTGTCTAGAGCATCTGGGGGTAAAGATAGGCACAGCAAGGTCATGACTTCAAAAGGTTTAAGAGACAGAAGGGTTAGGCTTTCTGTGACCACAGCTATTCAGTTCTATGATCTTCAAGATCGTTTGGGTTATGACCAACCAAGTAAAGCTGTGGAGTGGCTAATCAAATCAGCTTCAGATGCCATTGCAGAACTACCTTCCTTACCTGATACCCCAAAGCAACCAAGTGATGAGAAAAGGCCAAGTTTGGGCACTGAGCAAGGCTTTGATTCAGCTGATGCAGAGCTAGAAGGTGATACCAACTATCACCAGAACCTTTCTTTGTCTAAATCTGCTTGTAGCAGCACCTCAGAGACAAGCAAAGGCTCTGGCTTGTCACTCTCCAGGTCTGACATTCGTGTGAATCGTGTCAAGGCAAGAGAGAGGGCAAGGGTAAGAGCAGCCAAAGAGAAGGAGAAAGAAAAGGAGAAGGAGAATGACTCTCACATTGCTCATCACCACCATCACCACCACCACAATGTGAACTCCATTTCTCAAACAGCTTCTTTCACTGAGCTACTCACAGGTGGGATCAACAATGCAGTTCCCACAACAACAAGTCCAAGAGGTTCAGTTCATCAGAACCATGGTGTTGATGAGCCTAATCTGTTCAATAAACCAGCTACTAGACATCAACAATGGTCAGCACCAATGGACTACTTCACCTCAGGGCTTCTTGGACCATCCTCTTCAAGAACCCATCAACATCAACATCAACAACAACATCAACCTTCTTCAGGGTTCTCAATATCACAAATCCAATTGGGACATTCCCTTCCTGAGGCCATGTCAGTTTCACTACCATTCAGTGAAAACCATCACTCATCATCATCAGATCAACTGCAGCATCATTTCTCATTCATCCCTGATCATCTCATGCCAGCTGTGGTTACTTCTTCTCAGCCAAGCGGGAACGACTACAATCTCAACTTCACCATATCTTCGGGCCTTGCTGGTTTCAATAGGGGGACCCTTCAGTCCAATTCTCCGTCACTATTGCCTCATCTGCAGAGGTTTTCACCTATAGACGGATCCACTGTACCTTTCTTCATTGGAGCTGCTGCTCCTGCTTCAGCTTCAGCTTCAGCTACAGCTCCTACCATGGAGAATAACAACAACAATCATCACCACCATCAATTTTCATCTGTTTTTGATGGCAGCCGCTTGCAGCTTTACTATGGCGACGGATGCCGCCATTCAGATCAGAAGGGGAAAACCAAAAACTAA 1485 0.4593 MEEDEIQAQACKFPRVGNGRNESNKIGPRGGGNEQYPDEEEDGELRRRGGGGGSDVSTNRFHGWHNHSSRIIRVSRASGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKSASDAIAELPSLPDTPKQPSDEKRPSLGTEQGFDSADAELEGDTNYHQNLSLSKSACSSTSETSKGSGLSLSRSDIRVNRVKARERARVRAAKEKEKEKEKENDSHIAHHHHHHHHNVNSISQTASFTELLTGGINNAVPTTTSPRGSVHQNHGVDEPNLFNKPATRHQQWSAPMDYFTSGLLGPSSSRTHQHQHQQQHQPSSGFSISQIQLGHSLPEAMSVSLPFSENHHSSSSDQLQHHFSFIPDHLMPAVVTSSQPSGNDYNLNFTISSGLAGFNRGTLQSNSPSLLPHLQRFSPIDGSTVPFFIGAAAPASASASATAPTMENNNNNHHHHQFSSVFDGSRLQLYYGDGCRHSDQKGKTKN. 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05614 494 Coils Coil 211 233 - -
Seca12g05614 494 MobiDBLite consensus disorder prediction 210 236 - -
Seca12g05614 494 ProSiteProfiles TCP domain profile. 80 138 IPR017887 -
Seca12g05614 494 MobiDBLite consensus disorder prediction 266 291 - -
Seca12g05614 494 ProSiteProfiles R domain profile. 206 224 IPR017888 -
Seca12g05614 494 MobiDBLite consensus disorder prediction 1 64 - -
Seca12g05614 494 MobiDBLite consensus disorder prediction 210 249 - -
Seca12g05614 494 MobiDBLite consensus disorder prediction 34 49 - -
Seca12g05614 494 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 52 372 IPR005333 GO:0003700
Seca12g05614 494 MobiDBLite consensus disorder prediction 137 162 - -
Seca12g05614 494 MobiDBLite consensus disorder prediction 305 334 - -
Seca12g05614 494 Pfam TCP family transcription factor 79 226 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05614 Seca-Chr12 147461513 147464931 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05614 59 494 TCP Transcription Factor Family AT4G18390 42.241 2.58e-80 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca12g05614 TCP 3.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05614 - - jre:109011061 494.197