Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05604 ATGAGGAGGAGGAGGAATTGCAACTTAGAACTTCAACTTTTCCCCCCTTCCCATTCCGATCTTCGCCCCATCATGGAAGAAGAAGGGGAAGCTAGTGAAAGCCCACAACAACAAGACCACCAGCAGCCGTTAACCATTTTCTATGATGGCAAGATTTGCGTTTCTGATGTCACAGAACTTCAGGCTAGATCTATTTTAATGCTTGCGAATAAAGAGATAGAGGAAAAAGTGAGGACACCAACAACAAGTGGGTCAGAGCCATCTTCACCAATGCCAGTGTCATCACATTACAATTTGTATAGCCCTGGTAGTGGTCTTTCCATGAAAAAATCGCTGCAGAGGTTTCTTCAGAAGAGGAAGAATCGGGTCCAAGAAGCATCCCCATACCAAATGAGCAAAATTAATTAA 408 0.4363 MRRRRNCNLELQLFPPSHSDLRPIMEEEGEASESPQQQDHQQPLTIFYDGKICVSDVTELQARSILMLANKEIEEKVRTPTTSGSEPSSPMPVSSHYNLYSPGSGLSMKKSLQRFLQKRKNRVQEASPYQMSKIN. 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05604 135 MobiDBLite consensus disorder prediction 1 42 - -
Seca12g05604 135 SMART tify_2 37 71 IPR010399 -
Seca12g05604 135 MobiDBLite consensus disorder prediction 80 111 - -
Seca12g05604 135 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 12 132 IPR040390 -
Seca12g05604 135 MobiDBLite consensus disorder prediction 75 135 - -
Seca12g05604 135 Pfam Jas motif 109 130 IPR018467 -
Seca12g05604 135 ProSiteProfiles Tify domain profile. 37 71 IPR010399 -
Seca12g05604 135 Pfam tify domain 41 70 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05604 Seca-Chr12 147348021 147350416 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05604 1 130 Tify Gene Family AT1G30135 45.185 4.41e-29 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca12g05604 tify 8.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05604 - - gmx:100305565 176.407