Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05594 ATGGATGAGCTTTTAGCGGTGGTTGGTTACAAGGTTAGGTCATCAGACATGGCTGAAGTTGCTCAGAAGCTTGAACAGTTAGAAGAAGCCATGGGAAATTTCCAAGACGAAGACATCATCGCTCAACAACTCTCATCAGATACCGTCCATTACAACCCTTCTGATATCTCCAACTGGCTTCAAACCATGCTCTCTAATTTCGATCCTCCACCTCCTTCTTCTCTCTCATCTTCTTCCGATTACGATCTCAAAGCCATTCCAGGGAAAGCAATCTACGCTTCCGGACCAGAATCCGAATCTCCGTCCAACAAACGAACCAAAGAAAACGGGATCCGACTCGTTCACAGCCTCATGGCTTGCGCTGAAGCGGTGGAACAGAACAAGCTAGGAGTAGCAGAAGCTCTGGTGAAGCAGATCGGATACCTCGCGGTTTCACAAGAAGGTGCTATGAGGAAAGTTGCTACCTACTTCGCTGAAGGTCTTGCGAGAAGAATCTACAGAGTCTATCCTCCACAACCGCAACAGCATTTTCTCTCTGATACTCTTCAGATCCATTTCTATGAAACCTGTCCTTACCTCAAGTTCGCTCACTTCACTGCGAATCAAGCCATTCTTTGTTCGTTTCAAGGCAAGGATCGTGTTCATGTCATCGATTTCGCAATCAACCAAGGCATGCAGTGGCCGGCGTTGATGCAGGCTCTGGCTCTTCGACCTGGTGGTCCACCGGCTTTTCGTCTCACCGGAATCGGACCTCCGGCGCCGGATAACTCCGATCACCTCCAACAGGTTGGTTGGAAACTCGCTCAGTTAGCGGAAACGATTCATGTTCAGTTTGAATACCGAGGATTCGTAGCTAACAGTCTCGCGGATCTAGATGCTTCCATGCTTGAACTCCGTTCACCGGAAACGGAAGCTGTTGCCGTTAACTCTGTTTTCGAGCTTCATAAGCTTCTTGCTCGTCCCGGCGCGTTGGAGAAGGTTTTCTCTGTTATTCGTCAGATTCAGCCGGAGATTCTCACCGTCGTGGAGCAAGAAGCGAGCCACAATGGACCGGGTTTTCTCGACCGGTTCACTGAGTCGCTGCACTATTACTCCACCTTGTTTGACTCGCTGGAGGGGTCTTCGGTTGACCCGCAGGACAAGACCATGTCAGAGATTTACCTTGGGAAGCAAATCTGCAACGTGGTGGCGTGTGAAGGAGTGGACCGGATCGAGCGGCACGAGACGCTGAACCAGTGGCGGAACCGGTTCGGGTCGGCTGGGTTTTCTCCGGTTCATTTGGGATCCAACGCGTTCAAGCAAGCTAGCATGTTGCTGGCACTTTTCGCCGGTGGGGATGGGTATAGGGTTGAGGAGAACGATGGGTGTCTCATGTTGGGTTGGCACACTAGGCCAATGATTGCCACCTCTGCGTGGCAACTCGCTAACAAATCGGTTGCTGCTCACTGA 1449 0.51 MDELLAVVGYKVRSSDMAEVAQKLEQLEEAMGNFQDEDIIAQQLSSDTVHYNPSDISNWLQTMLSNFDPPPPSSLSSSSDYDLKAIPGKAIYASGPESESPSNKRTKENGIRLVHSLMACAEAVEQNKLGVAEALVKQIGYLAVSQEGAMRKVATYFAEGLARRIYRVYPPQPQQHFLSDTLQIHFYETCPYLKFAHFTANQAILCSFQGKDRVHVIDFAINQGMQWPALMQALALRPGGPPAFRLTGIGPPAPDNSDHLQQVGWKLAQLAETIHVQFEYRGFVANSLADLDASMLELRSPETEAVAVNSVFELHKLLARPGALEKVFSVIRQIQPEILTVVEQEASHNGPGFLDRFTESLHYYSTLFDSLEGSSVDPQDKTMSEIYLGKQICNVVACEGVDRIERHETLNQWRNRFGSAGFSPVHLGSNAFKQASMLLALFAGGDGYRVEENDGCLMLGWHTRPMIATSAWQLANKSVAAH. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05594 482 Gene3D - 1 67 IPR038088 -
Seca12g05594 482 SMART DELLA_2 2 77 - -
Seca12g05594 482 Coils Coil 17 37 - -
Seca12g05594 482 ProSiteProfiles GRAS family profile. 104 473 IPR005202 -
Seca12g05594 482 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 94 468 IPR005202 -
Seca12g05594 482 Pfam Transcriptional regulator DELLA protein N terminal 2 71 IPR021914 -
Seca12g05594 482 FunFam DELLA protein GAI 1 67 - -
Seca12g05594 482 Pfam GRAS domain family 113 473 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05594 Seca-Chr12 147120365 147126100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05594 1 477 GRAS Transcription Factor Family AT1G14920 69.320 0.0 721
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca12g05594 GRAS 2.2e-133 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05594 K14494 - gmx:547718 771.541