Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05574 ATGGAAAAATCGAAAACCTTTCTCCACAGTCTTGTGAAACACTTCAAATCCGGTTCCAGTAAAGAGCGAAACAATGAAGCTGACATACACAGAATGGCTGCACAGGAGCAGAAGATCTTTGCCTATGAAACCTTGATTGCTGCCACTAAGAATTTTAGTGCTATTCATAAGCTAGGTGAAGGAGGTTTTGGACCTGTCTACAAGGGGAGGCTGAATGATGGGAGAGAAATTGCAGTGAAGAAGTTATCAGTCACCTCAAAGCAAGGGAAGAAGGAGTTCTTGAATGAGGCCAAGTTGTTGGCTCGTGTGCAGCATCGGAATGTGGTGAATTTGTTGGGTTATTGTGTCCATGGAGCAGAAAAGCTACTTGTCTATGAGTATGTGCCTCACGAGAGCCTTGACAAGCTTCTATTCAAATCTCATAAGAGAGAGGAGCTTGATTGGAAACGTAGGTTTGGCATAATCACAGGTGTGGCAAAGGGATTACTTTATCTACACGAAGACTCGCATCATTGCATAATCCATCGTGACATCAAGGCAAGTAACATATTGCTTGATGACAAATGGACGCCCAAGATTGCAGACTTTGGCATGGCTCGTCTCTTCCCAGAAGATCAAAGCCAGGTCAATACACGTGTGGCTGGAACCAATGGATACATGGCTCCGGAATACATGATGCATGGAAACCTATCTGTGAAGGCAGACGTGTTTAGTTATGGCGTTTTGGTATTGGAGTTGATCACCGGTCAGCGAAACAACAACTTTAATTTGGACGTTGATGCCATGAATCTCCTTGATTGGGCATACAAGCAGTACAAGAAGGGGAAGAGCTTAGAGATTGTGGATTCGACATTAGCATCTACGATGGAAGCAGAGCAAGTAGGAATATGCATTCAGCTAGCTCTGCTATGCACACAAGGTGATCCACACCTACGTCCAACCATGAGGCGTGTGGTAGTGATGCTTTCAAGGAAGGCAGGGCACAATCACATGGATGAACCAACCAGACCAGGAATTCCTGGCACTAGATACAGAAGGCCTCGAAGGCACTCTGCTTTGTCTTCCACAGTTGAGAAAAATGAGTTCAAATTCTCTAATCTCATCTGTGTGTCATCTAAACAAAAAGCAGAAACAAAGGTCATGAAAAGTTGGGCTGATGATGTCGAAATGGACCAAATCTCATTAAGTGGGAGAGACCTGATTGTCATTATTCGACTGAGAGTAGAGAGTGAGAGAGCAATGAGACGAACTCTGCTAAGAAATGCTTCTCTCTACACTCGGAATCTTCTTCTTCACTCTTCTTCCACCACCACCACCGCTACCGCCACTTCACTCGCCGTTTCAACTCGCTCCCAACTCAGACTCTTCTCCTCTGATGAAAACCCCAATCCCGTTTCCAAACCCCCCGCCCCCCTTGACATCGAGGATGTCGATAACAAAGAGCTGAAAACGCGGATTCAGAATTACTTCAAGGGTGACGAGAATGCGCTTCCGTCGATCATGGAGGCCATTTTGCAGAGGAGGTTATCTGGGAAGCACGAGGAGACGGACGATGAGTTGTTGGAAGATCTCCAAATGCAACCCCTTGATGATGTCGATGACAGGGATTTCGAATCTGATTTCGAGGACTTGCACGAAACCGATGAAGAAATTGATGATTTGTATAATGCTAGGGACATAGTCATGAAGAGAATGGTCGAAGATGAGTACTTCAACATGGATGATAAGAAGTGGGATGAGATTGTTGAGGAGGGGATCAAGCATGGTTTTCTTAGGGATACAAAGGAGTGCGAGGAGATTCTAGAGGATATGCTTAGCTGGGACAAACTCCTCCCAGATGACATAAAGAAGAAGGTGGAAATAAAATTTAATGAGCTAGGGGACATGTGTGAAAGAGGGGAACTTGAACCTGAAGCAGCTTATGAGCAGTTTAAGAAGTTTGAGGATGAGATGGTAATGGAATACATGAAGATAATGGAAAAAGAGGAGGCCCCACAGTTTGATGATACTGCTGTGCCAGACAAGAAAAAGGATTCAGATGACCCACCTGGTGAAGGCCCAATTCTCCGGTGGCAAACCCGGGTAATATTTGCTCCTGGTGGTGATGCTTGGCATCCGAAAAACAGGAAAGTGAAACTATCTGTTACAGTGAAGGAGCTTGGACTTTCAAAATACCAATTTCGCCGTCTCAGAGAATTGGCTGGAAAACGTTATCATCCAGGGAGAGATGAGCTTACAATAACTAGTGAGAGGTTTGAACATCGTGAAGAAAACAGAAAGGACTGCTTAAGAACTCTTCTCTCTCTCATTGAGGAGGCCGGGAAAGCTAATAAACTAGTAGATGATGCCCGGACTTCATATGTCAAAGAGAGACTCCGAGCCAATTCAGCTTTCATGGAGAGGCTGCAAGCGAAGTCCATGAGATTGCGAGAATCTAATCAAGTTCCTGCCTGA 2454 0.4499 MEKSKTFLHSLVKHFKSGSSKERNNEADIHRMAAQEQKIFAYETLIAATKNFSAIHKLGEGGFGPVYKGRLNDGREIAVKKLSVTSKQGKKEFLNEAKLLARVQHRNVVNLLGYCVHGAEKLLVYEYVPHESLDKLLFKSHKREELDWKRRFGIITGVAKGLLYLHEDSHHCIIHRDIKASNILLDDKWTPKIADFGMARLFPEDQSQVNTRVAGTNGYMAPEYMMHGNLSVKADVFSYGVLVLELITGQRNNNFNLDVDAMNLLDWAYKQYKKGKSLEIVDSTLASTMEAEQVGICIQLALLCTQGDPHLRPTMRRVVVMLSRKAGHNHMDEPTRPGIPGTRYRRPRRHSALSSTVEKNEFKFSNLICVSSKQKAETKVMKSWADDVEMDQISLSGRDLIVIIRLRVESERAMRRTLLRNASLYTRNLLLHSSSTTTTATATSLAVSTRSQLRLFSSDENPNPVSKPPAPLDIEDVDNKELKTRIQNYFKGDENALPSIMEAILQRRLSGKHEETDDELLEDLQMQPLDDVDDRDFESDFEDLHETDEEIDDLYNARDIVMKRMVEDEYFNMDDKKWDEIVEEGIKHGFLRDTKECEEILEDMLSWDKLLPDDIKKKVEIKFNELGDMCERGELEPEAAYEQFKKFEDEMVMEYMKIMEKEEAPQFDDTAVPDKKKDSDDPPGEGPILRWQTRVIFAPGGDAWHPKNRKVKLSVTVKELGLSKYQFRRLRELAGKRYHPGRDELTITSERFEHREENRKDCLRTLLSLIEEAGKANKLVDDARTSYVKERLRANSAFMERLQAKSMRLRESNQVPA. 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05574 817 Gene3D - 689 814 - -
Seca12g05574 817 Gene3D Phosphorylase Kinase; domain 1 13 127 - -
Seca12g05574 817 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 21 366 - -
Seca12g05574 817 SMART serkin_6 52 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05574 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Seca12g05574 817 FunFam Cysteine-rich receptor-like protein kinase 2 128 330 - -
Seca12g05574 817 SUPERFAMILY Protein kinase-like (PK-like) 37 322 IPR011009 -
Seca12g05574 817 MobiDBLite consensus disorder prediction 664 687 - -
Seca12g05574 817 ProSiteProfiles Protein kinase domain profile. 52 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05574 817 Gene3D Transferase(Phosphotransferase) domain 1 128 335 - -
Seca12g05574 817 CDD STKc_IRAK 58 324 - -
Seca12g05574 817 FunFam Cysteine-rich receptor-like protein kinase 10 16 127 - -
Seca12g05574 817 Pfam Protein tyrosine and serine/threonine kinase 55 321 IPR001245 GO:0004672|GO:0006468
Seca12g05574 817 FunFam Ribosomal protein S24/S35 693 812 - -
Seca12g05574 817 MobiDBLite consensus disorder prediction 664 684 - -
Seca12g05574 817 Pfam Mitochondrial ribosomal subunit protein 705 782 IPR019349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05574 Seca-Chr12 146958365 146971238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05574 40 339 Receptor kinase-like Gene Family AT4G11530 52.318 3.25e-104 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca12g05574 PK_Tyr_Ser-Thr 2.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05574 K17413 - gmx:100500426 649.047