Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05567 ATGGCTTTGCTCAACATTCACATAATCTCCTCATTGCTTACCCCAATATTCACCTTCACCTTCTTCTTCTTGACCACTTTTCCAACAACATCCATTGGCCAAGAACATAACAAATACACAGAGTGTAGCCAGCCATACACCTGTGGAGAAATCTCTGGCATCTTCTACCCTTTTTGGGGAGAGAACAGACCTAGTTATTGTGGCAGCAATAAGCAGTTTGAGCTCAAATGTGAGGCTAATCAAAACACATCCATTCAAGTTGGTTCACAAAGTTTCCATGTGCTACGCATTGATCAATTGAGTTACACCATGAAAATGGTTAGAAAAGGCCTTGTTTATGATCATTGTTCTTCTGGTTTGACCAACACTTCTTTGAGCTCAAGTAGTCTTATTCATTTTATGCCTAATGTGAGGAACATCACCATCTTCTATGATTGTCCTGAAAATGGCACAAACTCTTTTCCCTGCCAGGAAGATAGGAACAAGCATGCTTTGTATGTGAATTCCACTACTAGAGAAGTCCAAAATTGCAAAGGAGTTAGTATTGAAGTGCATGTAACAGAAGAAGTGGAGCTTGATGGTGGTGGAATTGAAGGGCTAAACAAAGGCTTGAATGCTGGGTTTGATGTGATGTATGATTATGATATCCAAGCTTGCTTAAGATGTGTTTTAAGTAATGGAACCTGCGGAACCAATGATGAGTCTCAGTTTTCCTGTTATTGCCCTGATGGAACTGTTGCTTTGGATTGTTCTCATCATCACAGTAATCAATGGAATTGGAAAAGGAAGCTTGGTGTAGGAGTTGCTGCTGCTGTGGCCACTGCAGTTACAATAGGCATTGCCTTTTATATCTATTATTGGCAAAAGAAGAAGAAGAATCTTCATGCAGTATCTTCTATGCAATCTCAAAGCTTCTCTTCTTGTTCTTCTTTAGGAGACACTGAGAGGGGACATAAATACCGTGGACTTCACTTCTTCACCTATAGTGAACTAGAAGAGGCCACAAACTACTTTGATTCAGCCAGAGAACTAGGAGATGGAGGCTTTGGAACAGTTTATTTTGGCACACTTAAGGATGGGCGTTTTGTTGCAGTGAAAAGGATGTCTGAGAACAGTTATAGGAGAGTTGAGCAATTCATGAATGAAGTTGAGATCTTAACTGGCTTACACCACCAAAATCTTGTGTCACTATATGGATGCACCTCTCACCACAGCCGTGAACTTCTTCTTGTATATGAGTATGTTCCTAATGGAACTGTTGCTGATCACCTTCATGGTCCAAGAGCAAAACCTGGCACACTCACTTGGCATATCAGAATTAACATTGCCATTGAGACTGCTAGTGCATTGGTATATCTCCATGCTTCTGACATCATCCATAGAGATGTTAAAACCAAAAACATTCTCCTTGACAATCACTTTAGTGTCAAAGTAGCAGATTTTGGACTCTCACGCCTTTTCCCTAACCATGTCACTCACATTTCAACTGCTCCACAAGGGACTCCTGGTTATGTAGATCCAGAATACCATGAGTACTACCAGCTTACTGACAAAAGTGATGTTTTTAGCTTTGGAGTTGTCTTGATGGAGCTAATATCATCCATGCCTGCTGTTGATATCTCAAGGCATAGGCAAGAAATCAATTTGTCTAACATGGCCATTAAAAGGATTCAAAATGGGACATTACATGAGCTAGTGGACCCTACACTTGGGTTTGAATCAGATTTCAAGGTAAGGAAAATGATCAATGCTGTGGCAGAGTTAGCATTTCAGTGCTTGCAGAGTTCTAAAGATGTGAGACCTTCTATGGTAGAAGTGTTGGAGAGGCTCAAGGATATAGAGAGTGATGGGAAACATAATAGCAAACATGAGGTAATGGATATATTAGAAGATGATGATGCTTTGCTGAAGAATGAGCCACCACCTTCACCAGATTCAAATTTGAGGGGCATATCTACTACCCCAAATGGAAGCTAA 1977 0.4057 MALLNIHIISSLLTPIFTFTFFFLTTFPTTSIGQEHNKYTECSQPYTCGEISGIFYPFWGENRPSYCGSNKQFELKCEANQNTSIQVGSQSFHVLRIDQLSYTMKMVRKGLVYDHCSSGLTNTSLSSSSLIHFMPNVRNITIFYDCPENGTNSFPCQEDRNKHALYVNSTTREVQNCKGVSIEVHVTEEVELDGGGIEGLNKGLNAGFDVMYDYDIQACLRCVLSNGTCGTNDESQFSCYCPDGTVALDCSHHHSNQWNWKRKLGVGVAAAVATAVTIGIAFYIYYWQKKKKNLHAVSSMQSQSFSSCSSLGDTERGHKYRGLHFFTYSELEEATNYFDSARELGDGGFGTVYFGTLKDGRFVAVKRMSENSYRRVEQFMNEVEILTGLHHQNLVSLYGCTSHHSRELLLVYEYVPNGTVADHLHGPRAKPGTLTWHIRINIAIETASALVYLHASDIIHRDVKTKNILLDNHFSVKVADFGLSRLFPNHVTHISTAPQGTPGYVDPEYHEYYQLTDKSDVFSFGVVLMELISSMPAVDISRHRQEINLSNMAIKRIQNGTLHELVDPTLGFESDFKVRKMINAVAELAFQCLQSSKDVRPSMVEVLERLKDIESDGKHNSKHEVMDILEDDDALLKNEPPPSPDSNLRGISTTPNGS. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05567 658 Pfam Wall-associated receptor kinase C-terminal 168 244 IPR032872 -
Seca12g05567 658 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 17 654 IPR044652 GO:0004672
Seca12g05567 658 SMART serkin_6 338 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05567 658 MobiDBLite consensus disorder prediction 617 638 - -
Seca12g05567 658 MobiDBLite consensus disorder prediction 617 658 - -
Seca12g05567 658 Pfam Protein kinase domain 340 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05567 658 ProSiteProfiles Protein kinase domain profile. 338 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05567 658 Gene3D Phosphorylase Kinase; domain 1 308 414 - -
Seca12g05567 658 FunFam Wall-associated receptor kinase-like 20 415 623 - -
Seca12g05567 658 Pfam Wall-associated receptor kinase galacturonan-binding 42 107 IPR025287 GO:0030247
Seca12g05567 658 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Seca12g05567 658 SUPERFAMILY Protein kinase-like (PK-like) 319 610 IPR011009 -
Seca12g05567 658 Gene3D Transferase(Phosphotransferase) domain 1 415 628 - -
Seca12g05567 658 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05567 Seca-Chr12 146859671 146863155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05567 38 658 Receptor kinase-like Gene Family AT1G25390 43.519 9.31e-148 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca12g05567 Pkinase 9.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05567 - - gmx:100794703 887.486