Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05566 ATGATGACTCCAAACTTGAACTTAGAACCTGAAAATCATTCAGAAGGCAGCAGCCAAGTGGCTTCCAATATATCCTTGCAAGAAGCATCCCATGATCTTACCAGGGACAGCACAACCACTTCTTCCTGTCTTACAAATCTTACAAAGGCTGAAGGTGATCCAGGTTCTCTTACCCTTGACTTGACACTCAACTTTAATTCCAGTGATGGTGAGTTGAAGGGTTCAAGTGATGCGAGTAGTGAAGTGGGAGCTGAAGCTGCTGCTGATGCTTCAGCATCAGCATCAGCAACTCCCAGGGTTTTCTCATGTAATTATTGCAGGCGGAAGTTCTTTAGCTCACAGGCATTAGGAGGTCATCAGAATGCTCACAAAAGGGAGAGGACAATGGCTAAGCGCGCAATGCGAATGGGTATGTTCACCGAAAGGTATACAAGCTTGGCATCTCTACCTCTTCATGGTTCACCTTTTAGGTCTCTTGGTATTGAAGCTCATTCTGCAATGCACCGAAGACAAATGCCATCATCAATGAGGGTTCCTGATATGAGAGCTGGTGCAAAATTTGAGAAAAACCATTTTGGATCAGTAGTTTTCATGGAAGAAGATGATGTAGGTTTCTTTTGGCCTGGCAGTTTCAGACAGGTAGATCAGGGAGCTGGTGTTAATCTAGGACATCCTCAAACTTCAAATGGTAGTCTTGTTCCAAAGGCACCTCCTCCACCACCACCAGCATCTACATCCCCAGATCTCACATTGAAGCTATAA 762 0.4475 MMTPNLNLEPENHSEGSSQVASNISLQEASHDLTRDSTTTSSCLTNLTKAEGDPGSLTLDLTLNFNSSDGELKGSSDASSEVGAEAAADASASASATPRVFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSPFRSLGIEAHSAMHRRQMPSSMRVPDMRAGAKFEKNHFGSVVFMEEDDVGFFWPGSFRQVDQGAGVNLGHPQTSNGSLVPKAPPPPPPASTSPDLTLKL. 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05566 253 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Seca12g05566 253 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g05566 253 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 16 174 IPR044246 GO:0009788
Seca12g05566 253 FunFam Zinc finger protein 2 78 147 - -
Seca12g05566 253 MobiDBLite consensus disorder prediction 232 246 - -
Seca12g05566 253 SUPERFAMILY beta-beta-alpha zinc fingers 99 129 IPR036236 -
Seca12g05566 253 Gene3D Classic Zinc Finger 78 147 - -
Seca12g05566 253 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Seca12g05566 253 MobiDBLite consensus disorder prediction 30 49 - -
Seca12g05566 253 MobiDBLite consensus disorder prediction 217 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05566 Seca-Chr12 146835475 146839519 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05566 95 253 C2H2 Transcription Factor Family AT1G66140 44.624 7.31e-41 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca12g05566 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05566 - - gmx:100775305 375.17