LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca12g05565	ATGATTGGAGGTAAAGATCTTCGTAATGGTGTTGTTGACTCTGAAGGTGAGAACTCTAGGAGCAAGCTGTCAAGGCCCAATTTTGAGCCTAGAAAGGAGTACCCAGATGAGAAACTGGGTTACCCAGATAAGAAAGGTGTTGAATTTCTGAGAGATTCAGAGGTGGGTGGTGGTGGTGTTGATGGGGTTCTTCAGTCAAAGTCCACCAAGGTTGTTGTTGGCAGCTCAGGGTTGCAAGAGCTGACCCTCAGCTACCTTTGTGATAACCCAAAATTGGGTCTTGCTGAGAAAGAGATTCCTGGTAAAAGCTTGTTGAATTCCTTGGAAAAAATGAGCCACAAAGGTAAAGAGGTTGTTGTCGTTTCTGAGAATTCAAATCATGATGGAAAATGGGTAGAGAGAGATTTCCTGAGCTTGAGTGAAACCAGAGAGGATTCTTCAAAGCGATCGCTTGAAGAAGATGTTGAAAGGGAGAGTCATAGCCATAGGGGGGACAAGAAGCCAAAACTGGAAACACTTAATCTCTCTCTTGCCTTGCCTGATGTGTCACTTTCTCTCACTGCTTCAAACGCCTTACAAAATGGTGATCAACCAGTTAGGACTAAACCTAACAGGCCATCAACTACTCACACTTCATATTCAAATGATTACACAGCAGCTTCTTTGTCTTACTCTTATTCTCACCCTTTCTCACACAACCCAAGTTGCTCACTCACCCGCAATTCAACTGATTTTGATTATTCAGTGAGTAAAGATGACCAAATTTGGAATTGTGGAGAAGGTACTAATGGGTCTGTTCATAGTAGATTCAAGCCAATTGGAGATGGGGTTGGTTTGTCCAATCATGGTGGTGGTGGTGGTCTTAGTTCCTTCATGCAAGGTAATAGTCAGTATAAAACTACTAGTTCAGATAATCATTCATTTTTCCCTTCAGAATTGCCTGCAAGACCAAGATTTGAAGCTGCTCAGTCAGGGGACTCAAGGGGAAGGAATTCTGAGAATCTGAGAGCCTTGGAAGGGTTAGATGGTGGGAAGATAAGGAAGCCTTCTAGACCAGAGAGAATTGTTAGGGAAATTGTTTCAGAGTCTATCCCTATCATGGCATTGACAATTCAGGAGCTTACTGATGAAGTCATAGCATCAAGTAAGGAATACTTGAAGAATCTCATTGAGAAGCCTGAGAAGAAAGAGGAATTGGTCAGCCTTCAAAGCCGGCTTGAGAGAAGATCTGATCTTACCAAAGAGACTCTTTCAAAGTGCAATAAGGTGCAATTAGAGATTTTGTTAGCTACCAAGATGGGGCTGACAAGCTTCTTATCTGGCAAAGTTAACTTATCTGAGATGTTAGAGATTTTCTTGTATAGGAGATGTAGAAATATAACCTGCAAGCATTTGCTTCCTGTTGATGACTGTGACTGCAAGATTTGCTCAGGAAACAAAGGGTTTTGCAGCAATTGCATGTGTCCTGTATGTTTGAGCTTTGATTGTGCAAGTAACACTTGTAGTTGGATTGGATGTGATGTTTGTTCCCACTGGTGCCATGCTGCCTGTGGCATTCAGAGGAATCTCATCAAACCTGGGCCTAGCTTGAAGGGGCCTTCAGGTACCTCAGAGATGCAGTTTCATTGTATTGGCTGTGGACATGCCTCAGAAATGTTTGGTTTTGTTAAAGATGTGTTCATGTGTTGTGCAAAGGATTGGGGTCTTGAGACCTTGATCAAAGAGCTTGACTGTGTAAGGAGGATTTTCAGGGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATTTTAAAACTGATGACATGCTATTAAAGCTTCAAACTAAAATGGTATCTCCTTCAGATGCCTGCAATTACATCATACAATTTTTCAGCTATGCAGACAGCATGTCAGACTTTCCAGCTTCTGCTATTTCTTCAAAGGATTTGGCAGCCTCTCAAGCTAACCTTCCAAAGGATACACCATCATCTCTTTCAAAATCTAATTCTCTAATACCAAAATATCCTTATGACATGAGCTATTCTAGGTCACATTCTGATGCTTTGTCAAATGATCTTCATCAAAAAGACCTTAAAGCTTCCCTCTTAAGTGAACTAAAAAGTGAGGCTGATCTCCAATTGGAGGCTTTATTAAGGAAAGGTGGACTTGAAAGTTTGGAGAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTCCAAACCAAGGCAGATGAAGCAAGGAGAGAGGCAGAAGGGTTCCAGAAGATGATCAGGACCAAGACTGCACAGATGGAAGAAGAGTATGCTGCAAAGCTTTCCAAACTCTGTCTGCATGAGACTGAGGAAACACAGAGGAAAAAATTGGATGAACTGAAAGTCTTGGAAAATTCATATGTTGATTACTATAAAATGAAGAAGAGAATGCAAGATGAGATTGATGGTTTATTGCAGAGAATGGAGGCAACAAAGCAGCAATGGGTTTAA	2463	0.4166	MIGGKDLRNGVVDSEGENSRSKLSRPNFEPRKEYPDEKLGYPDKKGVEFLRDSEVGGGGVDGVLQSKSTKVVVGSSGLQELTLSYLCDNPKLGLAEKEIPGKSLLNSLEKMSHKGKEVVVVSENSNHDGKWVERDFLSLSETREDSSKRSLEEDVERESHSHRGDKKPKLETLNLSLALPDVSLSLTASNALQNGDQPVRTKPNRPSTTHTSYSNDYTAASLSYSYSHPFSHNPSCSLTRNSTDFDYSVSKDDQIWNCGEGTNGSVHSRFKPIGDGVGLSNHGGGGGLSSFMQGNSQYKTTSSDNHSFFPSELPARPRFEAAQSGDSRGRNSENLRALEGLDGGKIRKPSRPERIVREIVSESIPIMALTIQELTDEVIASSKEYLKNLIEKPEKKEELVSLQSRLERRSDLTKETLSKCNKVQLEILLATKMGLTSFLSGKVNLSEMLEIFLYRRCRNITCKHLLPVDDCDCKICSGNKGFCSNCMCPVCLSFDCASNTCSWIGCDVCSHWCHAACGIQRNLIKPGPSLKGPSGTSEMQFHCIGCGHASEMFGFVKDVFMCCAKDWGLETLIKELDCVRRIFRGSEDRKGKELHFKTDDMLLKLQTKMVSPSDACNYIIQFFSYADSMSDFPASAISSKDLAASQANLPKDTPSSLSKSNSLIPKYPYDMSYSRSHSDALSNDLHQKDLKASLLSELKSEADLQLEALLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGFQKMIRTKTAQMEEEYAAKLSKLCLHETEETQRKKLDELKVLENSYVDYYKMKKRMQDEIDGLLQRMEATKQQWV.	821

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca12g05565	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	409	424	IPR004082	-
	Seca12g05565	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	716	736	IPR004082	-
	Seca12g05565	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	567	586	IPR004082	-
	Seca12g05565	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	448	469	IPR004082	-
	Seca12g05565	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	370	392	IPR004082	-
	Seca12g05565	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	494	514	IPR004082	-
	Seca12g05565	820	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	755	777	IPR004082	-
	Seca12g05565	820	MobiDBLite	consensus disorder prediction	142	169	-	-
	Seca12g05565	820	MobiDBLite	consensus disorder prediction	299	337	-	-
	Seca12g05565	820	Coils	Coil	722	756	-	-
	Seca12g05565	820	Pfam	PHD - plant homeodomain finger protein	457	581	IPR032881	-
	Seca12g05565	820	MobiDBLite	consensus disorder prediction	189	214	-	-
	Seca12g05565	820	CDD	PHD_OBE1_like	487	546	IPR047578	-
	Seca12g05565	820	MobiDBLite	consensus disorder prediction	10	40	-	-
	Seca12g05565	820	Pfam	Coiled-coil region of Oberon	681	809	IPR032535	-
	Seca12g05565	820	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	109	819	IPR004082	-
	Seca12g05565	820	Coils	Coil	770	790	-	-
	Seca12g05565	820	Coils	Coil	798	818	-	-
	Seca12g05565	820	MobiDBLite	consensus disorder prediction	1	40	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca12g05565	Seca-Chr12	146806541	146810729	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca12g05565	457	586	PHD Gene Family	AT5G57380	24.615	2.51e-08	55.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca12g05565	-		-	gmx:100820216	1350.5