Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05564 ATGTTCTTTGGTTTCATTTTCCTTGTTGGTCAAGCAATACTGGCATACCACACTGTACCAGCCCCACATGAAACACAGAAGATGGTTCACATGACACTTCATTTCATTGCTATAATTCTTGGGATTGTTGGAATATGTGCCGTTTTCAAGTTCCATGATATGATTAACTTGGAGGATGTTTACAGCCTCCATTCATGGATTGGCCTTGGCACCTTTTGCTTGTTTGGCTTGCAGTGGCTTTTTGGACTTACTTTCATGCTTGGATCTCCTCAATCAAGGGCTGCAGTGGCTCCATGGCACATAGCTGGTGGCAGAGCATTATTTTACATGGCAATTTGTGCTGCACTAACAGGGTTGATGGAGAAGTATACTATGTTAAGACTGCTGCCACACCAGAGAGAATCTCATTTGATTAACTTCACGGGTCTAGCAATTCTCTTGTTTGGAGTATTTGTGGATATAACAGTTGGTTTGGCCCATTTTGAGTAA 489 0.4213 MFFGFIFLVGQAILAYHTVPAPHETQKMVHMTLHFIAIILGIVGICAVFKFHDMINLEDVYSLHSWIGLGTFCLFGLQWLFGLTFMLGSPQSRAAVAPWHIAGGRALFYMAICAALTGLMEKYTMLRLLPHQRESHLINFTGLAILLFGVFVDITVGLAHFE. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05564 162 Pfam Eukaryotic cytochrome b561 1 124 IPR006593 -
Seca12g05564 162 CDD Cyt_b561_ACYB-1_like 1 126 - -
Seca12g05564 162 SMART 561_7 1 119 IPR006593 -
Seca12g05564 162 ProSiteProfiles Cytochrome b561 domain profile. 1 157 IPR006593 -
Seca12g05564 162 Gene3D - 1 159 - -
Seca12g05564 162 PANTHER CYTOCHROME B561-RELATED 1 156 IPR043205 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05564 Seca-Chr12 146791177 146793074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05564 1 162 Chloroplast and Mitochondria Gene Families AT1G14730 59.036 1.21e-61 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05564 K08360 - gmx:100305990 274.633