Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05562 ATGGAAGGAAGAGGAGGAGGAGGAGGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGATAATGTATATGTCTATGGTGATGATAGTGAGGATGATGAGGACAATGAAGATAGTGATGATGAGGGCTCCATTCATTTCGGTAATAAAGATGATGCAGGTCAAAGTGAGTATGCAGGCATAGGAATGAGTATCAATGATTTGGATGATATGCAGAAAATAGATATGAAGAGCATTAGTTGTGAAGGGGTTGCTAAATGTGACTTTGCGGAGTTGGAACTTGGGTATGTCTTTTACTGTAAGTATGCAATGAAGAAGGGTTTTGCTGTCCGAAAAGGAAAGGTGGTTAGGAACACAAGAGGCGAAATTGTGCAGCAGACATTGTTTTGTAACAGGGAAGGAAAAAGACAAAGCAATAATCTAAAGAAGCGTGAACCAAGACCTGAAACTAGATATGGTTGCTTTGCTTTATTATCTCTTCGTATTGACTTCAGCTCTGGATGA 540 0.3963 MEGRGGGGGEEEEEEEEEEEEEEEEEEEEEEGDNVYVYGDDSEDDEDNEDSDDEGSIHFGNKDDAGQSEYAGIGMSINDLDDMQKIDMKSISCEGVAKCDFAELELGYVFYCKYAMKKGFAVRKGKVVRNTRGEIVQQTLFCNREGKRQSNNLKKREPRPETRYGCFALLSLRIDFSSG. 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05562 179 Coils Coil 7 34 - -
Seca12g05562 179 MobiDBLite consensus disorder prediction 7 53 - -
Seca12g05562 179 MobiDBLite consensus disorder prediction 1 68 - -
Seca12g05562 179 Pfam FAR1 DNA-binding domain 110 174 IPR004330 -
Seca12g05562 179 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 14 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05562 Seca-Chr12 146752704 146753692 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g05562 FAR1 7.5e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05562 - K17604 tpra:123886262 103.99