Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05551 ATGGTTTCTCTCCCGAAGCTCACTGCGACAGCCGAATCCACAGTGATTTTCTCCGATTGCGCGATCTGCCTGACCGAGTTCTTCGTCGGTGACGAAATCCGAGTGCTACCTCAGTGCGGCCATGGCTTCCATGTGTCCTGCATCGACGCATGGCTCAAATCGCATTCTTCGTGCCCTTCCTGCCGTCAAATTCTGGTGGTTTCTAGATGCGACAAGTGTGGCGGGATCTCTGCCCCTCCCCTGCCACTGCCACCAGATTCCGAAGCCAGATTCAAGGTAAGGGAGGACGATTGCCAATAG 300 0.5533 MVSLPKLTATAESTVIFSDCAICLTEFFVGDEIRVLPQCGHGFHVSCIDAWLKSHSSCPSCRQILVVSRCDKCGGISAPPLPLPPDSEARFKVREDDCQ. 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05551 99 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 3 74 - -
Seca12g05551 99 SMART ring_2 20 61 IPR001841 -
Seca12g05551 99 Pfam Ring finger domain 19 62 IPR001841 -
Seca12g05551 99 ProSiteProfiles Zinc finger RING-type profile. 20 62 IPR001841 -
Seca12g05551 99 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 66 IPR013083 -
Seca12g05551 99 SUPERFAMILY RING/U-box 19 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05551 Seca-Chr12 146642625 146642924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05551 1 73 C3H Transcription Factor Family AT1G20823 72.000 1.24e-33 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05551 - - gmx:100794614 173.711