Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05545 ATGCTACTTGATAAAAACAGTTCTTCGGAGACAACACCTCCCACATCGACCAAAAAGAAAAGCGTATCCATTCCCGTTGTAGCTTCCATTGCAGCAGCTGCGTCCTTTTTTGTGTTATTCATCATAGGATTCTTAATCTTCCGGTGTGTAAGAAGAGCTACAGCAAGAGACACAAACCCGGAACACTCCAACACGTGTCGTCAGTTCACCATCGCTGAGATAAGAGCTGCCACCAACAACTTCGACGACGGTTTAATCGTTGGTAAGGGAGGGTTTGGGAACGTGTACAAAGGCCAGATTGACAAGTGTCACACACCAGTTGCAGTTAAGAGACTCAAACCGGGTTCAGATCAAGGTGCACACGAGTTCCGAACCGAGATCAAGATGCTCTCACAGTTTCGCCACCCTCACTTAGTCTCTCTCATCGGTTACTGCAGCGACCACGGAGAAATGATCCTCGTCTACGATTTCATGGCGCGTGGAACTCTACGCGACCACCTCTACGGTCCACACCACCACCATCAACTCTCCTGGAACCAACGACTCGAAATCTGCCTCCCCGCAGCGCGTGGGCTCCACTTCCTCCATGCTGGCATCAACAGGCAGAGCGTGATCCACCGTGACGTGAAGAGCACCAACATCTTGCTGGACGAGAATTGGGTCGCTAAGGTTTCAGATTTCGGGTTGTCCAAGGTTGGGCCCAATGCGTCCCACGTGACCACTGATGTGAAGGGTAGTTTGGGGTATTTGGATCCTGAGTACTACATGAGTCTTTGGTTGACTCACAAATCTGACGTGTACTCTTTTGGTGTGGTTTTATTGGAGGTATTGTGTGGGAGGCCACCTATCAAGAGTAGGGTGGACAAGCACCAGGATTGCTTGGTGACATGGGTGAAGATGTGTTGTCATGAGGGGAAGATTGATCAGACGGTGGATCCTGTTCTGAGGGGAACCATCAGGCCCAAGTGTTTGAAGAAATTTGTGGAGGTTGCATTGAGTTGTTTGCATGATCATGGGAAGCAACGGCCTTTGATGAGAGATGTGGTAAACGGGTTAGAGTGTGCATTGAAAATTCAAAAAGGTGGGGCCCTTGTTTGGGAAAAGAAAAAGAGTAGCGAGGAGATAGCAATGAGCTTGAGGAAAGTTGAGGGTCAAGAAGAATTTGATGAGAAATTTGGGAGAGTGGAGGAGTCTAGTAGTAGCAAGGCTACGACAACATGTAGTGAGGAGGAACAAGCTTTGGTGTATGGGGTTGGAAATCCCAGAGCACGGTAA 1275 0.4886 MLLDKNSSSETTPPTSTKKKSVSIPVVASIAAAASFFVLFIIGFLIFRCVRRATARDTNPEHSNTCRQFTIAEIRAATNNFDDGLIVGKGGFGNVYKGQIDKCHTPVAVKRLKPGSDQGAHEFRTEIKMLSQFRHPHLVSLIGYCSDHGEMILVYDFMARGTLRDHLYGPHHHHQLSWNQRLEICLPAARGLHFLHAGINRQSVIHRDVKSTNILLDENWVAKVSDFGLSKVGPNASHVTTDVKGSLGYLDPEYYMSLWLTHKSDVYSFGVVLLEVLCGRPPIKSRVDKHQDCLVTWVKMCCHEGKIDQTVDPVLRGTIRPKCLKKFVEVALSCLHDHGKQRPLMRDVVNGLECALKIQKGGALVWEKKKSSEEIAMSLRKVEGQEEFDEKFGRVEESSSSKATTTCSEEEQALVYGVGNPRAR. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05545 424 ProSitePatterns Protein kinases ATP-binding region signature. 87 110 IPR017441 GO:0005524
Seca12g05545 424 Gene3D Transferase(Phosphotransferase) domain 1 158 376 - -
Seca12g05545 424 PANTHER OS07G0166700 PROTEIN 65 359 IPR045272 GO:0004714|GO:0006468
Seca12g05545 424 FunFam Receptor-like protein kinase FERONIA 53 157 - -
Seca12g05545 424 FunFam Receptor-like protein kinase FERONIA 158 375 - -
Seca12g05545 424 Gene3D Phosphorylase Kinase; domain 1 52 157 - -
Seca12g05545 424 Pfam Protein tyrosine and serine/threonine kinase 87 351 IPR001245 GO:0004672|GO:0006468
Seca12g05545 424 CDD STKc_IRAK 87 353 - -
Seca12g05545 424 SMART serkin_6 81 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05545 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Seca12g05545 424 ProSiteProfiles Protein kinase domain profile. 81 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05545 424 SUPERFAMILY Protein kinase-like (PK-like) 64 350 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05545 Seca-Chr12 146594233 146595710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05545 17 360 Receptor kinase-like Gene Family AT3G51550 50.789 2.46e-121 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca12g05545 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05545 - - gmx:100792589 550.051