Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05534 ATGCAGATGGATATATTTGAGGATAAATCAACTGTTAATTTGGACCAAGATAAAGATCCAAATTTTGATGTTTCTTTTGGGGATAACTGTAGTGGAGAAAACAATGATGATAGTTGTGATGGAGAAGGCAATGATGTTAGTTGTTCTGGAGAAGACATTGATGATAGCTGTAGTGAAGAGGATTTTTGTATTGGTGATGAGAAAGAGAAAGATACTGAGGAAAAAGTAAAAGTAGGTGAGTTGGAAAAAAGGATTTTAGACTTAACAGCTGATGATATACTGTCATTGGAGTTTGGCAGTGAAGAGCTAGCATTTGCATTTTATGAGTCATATGCAAAAGCTTTAGGATTTGTGGTTAGGAAAGATGATGTTAAGAAGGATATAAGGGGACAGATTATAATGCGGCAGTATGTTTTCAATAAGGAAGGATTAAGGAAGAAAAAACATTTCATGAGGTTAGATAGGAAAAGAGATCATAGACCTATCACTCGCACTAAGTGTAACGCTAAGCTCCGGATCCACTACCATCAAAGGTCAAGTAAATGGAGAGTGGTCTCGTTTGAGGAGTGTCACAATCATGAACTTACTCCAGCAAAATTTGTGCATTTGATCCCTGCATACCGTAAAATGGCTGATGCAGACAAAGCGCAGGTGGATAGTTTGCATTCGTTTGGGGTAAGAACATGTCACATAATGGGGTACCTTGTATCTCGAAAGGGTGGATATGGTGGTGTTGGTTTTACTAGAAAGGATTTATATAACTATTTGGACTGCAAAACTCATATGAAGATTAAAGATGGGGACGCACGTGCTGCATTGAGTTATTTACAAGGCAAAGCTGACAATGGAGGAACATTAGTTGCTAGATACCAAAATACTAGAGATGGTAAGCTGAAATATCTATTTTGGGCAGATGCAGTTAGCAGATTTGATTATAAGTGTTTCGGTGATGTAGTGGCCTTTGACACCACTTATAAAAAGAACAGGTACAACTATCCCTTGGTTATCTTCTCCGGCTGCAATCATCATTCCCAAACCATAATTTTTGGTTGTGCTCTTGTTCTAGATGAAACAATTGAGACATACAAGTGGGTATTGGAATCTTTTCTGGCTGCAATGTCAAATAAACATCCAAAAGCAGTGGTGACAGATGGAGGTGGAGCTATGAGGGAGGCTATAAGGCATGTTTTTCCCGAGTCTTTACATCATTTGTGTGCTTGGCACTTGCATAATAATGCATGTGAAAATGTGAAGCATCCAGCATTTTTGGAGGACTTTAAGACAGCTATGTATAAAAAAATTTCAATAGAACAATTTGAACAGTTTTGGGAGAATATGGTTCGGAAGCATGGTCTTGTGGGAAACAGATGGGTTTCAAAGACATATGAAAATAGGAGGCTGTGGGCGACTGCTTATTTGCGTGATAAGTTTTTTGGTAGGATTCGGACAACATCTCAGTGTGAAGCTATTAATTCAGTCATTAAGGTGTATGTTAAGAGAAAAAGCAGCATGGTTGAGTTTATGCATAATTTTCATAGAGCTTTGAGGGAGTACCGAAATAATGAGTTCATTGCTGATTTTAAGTCTCTATACTCAGAACCTGTGATGAGTACACCACTTGCCAAGATTTAG 1632 0.3811 MQMDIFEDKSTVNLDQDKDPNFDVSFGDNCSGENNDDSCDGEGNDVSCSGEDIDDSCSEEDFCIGDEKEKDTEEKVKVGELEKRILDLTADDILSLEFGSEELAFAFYESYAKALGFVVRKDDVKKDIRGQIIMRQYVFNKEGLRKKKHFMRLDRKRDHRPITRTKCNAKLRIHYHQRSSKWRVVSFEECHNHELTPAKFVHLIPAYRKMADADKAQVDSLHSFGVRTCHIMGYLVSRKGGYGGVGFTRKDLYNYLDCKTHMKIKDGDARAALSYLQGKADNGGTLVARYQNTRDGKLKYLFWADAVSRFDYKCFGDVVAFDTTYKKNRYNYPLVIFSGCNHHSQTIIFGCALVLDETIETYKWVLESFLAAMSNKHPKAVVTDGGGAMREAIRHVFPESLHHLCAWHLHNNACENVKHPAFLEDFKTAMYKKISIEQFEQFWENMVRKHGLVGNRWVSKTYENRRLWATAYLRDKFFGRIRTTSQCEAINSVIKVYVKRKSSMVEFMHNFHRALREYRNNEFIADFKSLYSEPVMSTPLAKI. 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05534 543 MobiDBLite consensus disorder prediction 1 45 - -
Seca12g05534 543 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 94 539 IPR031052 GO:0006355
Seca12g05534 543 Pfam FAR1 DNA-binding domain 107 196 IPR004330 -
Seca12g05534 543 Pfam MULE transposase domain 318 412 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05534 Seca-Chr12 146523384 146525816 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g05534 MULE 8.6e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05534 - - ccaj:109792835 709.523