Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05520 ATGGATGATGATGTGTTGAACATGCCCAATTGGGGTTATTATGAGCCCTTCAAAGGGGGACATCTCGGTCTGCAGCTCATGCCTAGCATGGCAGATCGTGACACAAAACCATTTTTCCCTGGTCGTGATCCAGCTATGTTAGTAGGTGCAAATGGAACTTTTCATCCTCGAGATTGTGTTGTTTCGGAGTCGCCAATTCCAATAAGCTATGTCAGAGATAATTGGATAAGCCAGAGGGATAGGATTTTTAATATGCAGCCCACAAATCCTAATTATGCTGTTCTTCCAGAAACATCAGGACCTCCCTCCCTGCAAATGATACAAGCACCTGATACATCAAGAGATGAGAAGGTGGATAGAGTTGAAGAAGTAGTTGTTAAAAAGGAAGGTGGCCAATCAAAGAAAAGGCCAAGTAAGGGTGCTCTCACAACTCCAAAAGCTAAGAAACCTAGGAAGCCAAAGGATAATAGCAATGTTTCAGTTCAACGTGTCAAACCACCTAAGAAGACTATGGAGCTTGTGATAAATGGAATTGATATGGACATTTCTGGTCTACCTGTTCCAGTCTGTTCATGTACTGGGACTCCTCAGCAGTGTTATCGTTGGGGCTGTGGAGGTTGGCAATCAGCTTGTTGTACCACAAATGTGTCAATATATCCTTTGCCAATGAGCATAAAAAGGCGCGGTGCAAGGATAGCTGGGCGGAAAATGAGCCAAGGTGCTTTTAAGAAGGTTTTAGAGAAACTTGCAGCTGAAGGTTATAATTTTGCTAACGCTATTGATCTGAAAACTCATTGGGCTAGGCATGGCACCAACAAGTTTGTTACTATCAGGTAG 837 0.4325 MDDDVLNMPNWGYYEPFKGGHLGLQLMPSMADRDTKPFFPGRDPAMLVGANGTFHPRDCVVSESPIPISYVRDNWISQRDRIFNMQPTNPNYAVLPETSGPPSLQMIQAPDTSRDEKVDRVEEVVVKKEGGQSKKRPSKGALTTPKAKKPRKPKDNSNVSVQRVKPPKKTMELVINGIDMDISGLPVPVCSCTGTPQQCYRWGCGGWQSACCTTNVSIYPLPMSIKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANAIDLKTHWARHGTNKFVTIR. 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05520 278 MobiDBLite consensus disorder prediction 94 166 - -
Seca12g05520 278 MobiDBLite consensus disorder prediction 94 110 - -
Seca12g05520 278 Pfam GAGA binding protein-like family 1 278 IPR010409 -
Seca12g05520 278 MobiDBLite consensus disorder prediction 112 135 - -
Seca12g05520 278 SMART GAGA_bind_2 1 278 IPR010409 -
Seca12g05520 278 PANTHER - 1 278 IPR010409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05520 Seca-Chr12 146355248 146356084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05520 1 278 BBR or BPC Transcription factor family AT2G01930 58.923 2.47e-110 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Seca12g05520 GAGA_bind 2.1e-105 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05520 - - gmx:100791533 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05520 12 146355248 146356084 Seca12g05520 12 146355248 146356084 ECH