Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca12g05519 | ATGTTAGACAACAGTGCTTCTTCAGGTGCACCTTCTTCTTCTCCTGATGCTGCCTTTGCATTATCTGAAAATGGGGTTTCTAATAACAAAAGAAAAAGAAGACCAGCAGGCACACCCGATCCAGATGCTGAGGTTGTGTCCCTCTCACCAAAGACCTTGTTGGAATCTGACAGATATGTGTGTGAGATCTGCAACCAAGGGTTTCAGAGGGACCAGAATCTTCAAATGCATAGGAGAAGGCATAAGGTGCCATGGAAATTGCTGAAAAGGGAAACACAAGGGCAGAAGAAAAGGGTATTTGTTTGCCCTGAACCAAGTTGTTTACACCATGACCCTTGTCATGCCCTTGGTGACCTTGTGGGAATTAAGAAGCACTTTAGAAGGAAGCATAGCAATCACAAGCAGTGGGTTTGTGACAAGTGTTCTAAAGGGTATGCAGTTCAATCTGATTACAAAGCTCACATCAAAACCTGTGGCACCAGAGGCCATTCGTGTGACTGTGGCCGTGTGTTTTCCAGGGTTGAAAGTTTCATAGAACATCAAGATAGATGCACAGTCCGGCAACACAGGCCAGAGTTACAAGTACTTCAACCTGCATGCTCTTCTAGAACAGCTTCAAGCACAAGTCCATCAAGTGAGGCAAATTTTAGTATAGCCCCATTGCAAGGACTTCCACTGCCAAAACCAGCTGAACAGCCACCAGCTGGTTTATTAACTTCAGAGATATTACACAATAAGGCCAGCACCTCATCACATCAGAGGCAGCATAACTTAGAACTTCAGCTCTTACCTTCTTCAATAAATTCTCAAGAGAAAATTAGAACCTCAAAGGAAAACCATGAAACCACCAATTTGAAACTCTCAATAGGTTCATGTAGTAATAACAACAATGACAAAGGGAGTACTCATGAACAATCAGAGAGACCATGTTCAGAAACAGTAGTACATTTGAGTCCACCTAACATTGTGAATGATTCCTCCACATTGGAAGTGGCAAGGTTGAAAGAGTTTACTAGTGAGGAGCTCAAGTTAGCCATGGCAGAAAAGGCTTATGCAGAAGAGGCTAGAAGAGAAGCTAAGCATCAAATTGAGATAGCTGAACTTGAGTTTGAGAATGCCAAAAGGATAAGGAAACAAGCACAAGCTGAGCTTGGAAAGGCTGAAGCTTTGAGAAAACAAGCAATCAAGAAGATAAGCTCCACTGTTATGGAAATAACCTGTCAAGCTTGCAAGCAACAGTTTCAATCTTCAACTGTTGGGGTTCCATCAGAAGAGATTTCCATTGTGATGAGTTACATGTCTTCAGCAAACACAGAAGGTGAAGCAGATCAATGA | 1335 | 0.4255 | MLDNSASSGAPSSSPDAAFALSENGVSNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDRCTVRQHRPELQVLQPACSSRTASSTSPSSEANFSIAPLQGLPLPKPAEQPPAGLLTSEILHNKASTSSHQRQHNLELQLLPSSINSQEKIRTSKENHETTNLKLSIGSCSNNNNDKGSTHEQSERPCSETVVHLSPPNIVNDSSTLEVARLKEFTSEELKLAMAEKAYAEEARREAKHQIEIAELEFENAKRIRKQAQAELGKAEALRKQAIKKISSTVMEITCQACKQQFQSSTVGVPSEEISIVMSYMSSANTEGEADQ. | 445 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca12g05519 | 444 | SMART | c2h2final6 | 100 | 130 | IPR013087 | - | |
Seca12g05519 | 444 | SMART | c2h2final6 | 59 | 81 | IPR013087 | - | |
Seca12g05519 | 444 | SMART | c2h2final6 | 136 | 163 | IPR013087 | - | |
Seca12g05519 | 444 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 18 | 407 | IPR031140 | - | |
Seca12g05519 | 444 | Gene3D | Classic Zinc Finger | 121 | 197 | - | - | |
Seca12g05519 | 444 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 59 | 81 | IPR013087 | - | |
Seca12g05519 | 444 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 61 | 81 | IPR013087 | - | |
Seca12g05519 | 444 | FunFam | protein indeterminate-domain 12-like | 38 | 106 | - | - | |
Seca12g05519 | 444 | Gene3D | Classic Zinc Finger | 37 | 102 | - | - | |
Seca12g05519 | 444 | MobiDBLite | consensus disorder prediction | 198 | 218 | - | - | |
Seca12g05519 | 444 | MobiDBLite | consensus disorder prediction | 288 | 309 | - | - | |
Seca12g05519 | 444 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Seca12g05519 | 444 | MobiDBLite | consensus disorder prediction | 198 | 235 | - | - | |
Seca12g05519 | 444 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Seca12g05519 | 444 | Coils | Coil | 349 | 397 | - | - | |
Seca12g05519 | 444 | SUPERFAMILY | beta-beta-alpha zinc fingers | 58 | 156 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca12g05519 | Seca-Chr12 | 146282948 | 146286162 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca12g05519 | 23 | 443 | C2H2 Transcription Factor Family | AT2G01940 | 56.637 | 5.33e-159 | 455 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca12g05519 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca12g05519 | K25871 | - | gmx:100791007 | 654.825 |