Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05519 ATGTTAGACAACAGTGCTTCTTCAGGTGCACCTTCTTCTTCTCCTGATGCTGCCTTTGCATTATCTGAAAATGGGGTTTCTAATAACAAAAGAAAAAGAAGACCAGCAGGCACACCCGATCCAGATGCTGAGGTTGTGTCCCTCTCACCAAAGACCTTGTTGGAATCTGACAGATATGTGTGTGAGATCTGCAACCAAGGGTTTCAGAGGGACCAGAATCTTCAAATGCATAGGAGAAGGCATAAGGTGCCATGGAAATTGCTGAAAAGGGAAACACAAGGGCAGAAGAAAAGGGTATTTGTTTGCCCTGAACCAAGTTGTTTACACCATGACCCTTGTCATGCCCTTGGTGACCTTGTGGGAATTAAGAAGCACTTTAGAAGGAAGCATAGCAATCACAAGCAGTGGGTTTGTGACAAGTGTTCTAAAGGGTATGCAGTTCAATCTGATTACAAAGCTCACATCAAAACCTGTGGCACCAGAGGCCATTCGTGTGACTGTGGCCGTGTGTTTTCCAGGGTTGAAAGTTTCATAGAACATCAAGATAGATGCACAGTCCGGCAACACAGGCCAGAGTTACAAGTACTTCAACCTGCATGCTCTTCTAGAACAGCTTCAAGCACAAGTCCATCAAGTGAGGCAAATTTTAGTATAGCCCCATTGCAAGGACTTCCACTGCCAAAACCAGCTGAACAGCCACCAGCTGGTTTATTAACTTCAGAGATATTACACAATAAGGCCAGCACCTCATCACATCAGAGGCAGCATAACTTAGAACTTCAGCTCTTACCTTCTTCAATAAATTCTCAAGAGAAAATTAGAACCTCAAAGGAAAACCATGAAACCACCAATTTGAAACTCTCAATAGGTTCATGTAGTAATAACAACAATGACAAAGGGAGTACTCATGAACAATCAGAGAGACCATGTTCAGAAACAGTAGTACATTTGAGTCCACCTAACATTGTGAATGATTCCTCCACATTGGAAGTGGCAAGGTTGAAAGAGTTTACTAGTGAGGAGCTCAAGTTAGCCATGGCAGAAAAGGCTTATGCAGAAGAGGCTAGAAGAGAAGCTAAGCATCAAATTGAGATAGCTGAACTTGAGTTTGAGAATGCCAAAAGGATAAGGAAACAAGCACAAGCTGAGCTTGGAAAGGCTGAAGCTTTGAGAAAACAAGCAATCAAGAAGATAAGCTCCACTGTTATGGAAATAACCTGTCAAGCTTGCAAGCAACAGTTTCAATCTTCAACTGTTGGGGTTCCATCAGAAGAGATTTCCATTGTGATGAGTTACATGTCTTCAGCAAACACAGAAGGTGAAGCAGATCAATGA 1335 0.4255 MLDNSASSGAPSSSPDAAFALSENGVSNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDRCTVRQHRPELQVLQPACSSRTASSTSPSSEANFSIAPLQGLPLPKPAEQPPAGLLTSEILHNKASTSSHQRQHNLELQLLPSSINSQEKIRTSKENHETTNLKLSIGSCSNNNNDKGSTHEQSERPCSETVVHLSPPNIVNDSSTLEVARLKEFTSEELKLAMAEKAYAEEARREAKHQIEIAELEFENAKRIRKQAQAELGKAEALRKQAIKKISSTVMEITCQACKQQFQSSTVGVPSEEISIVMSYMSSANTEGEADQ. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05519 444 SMART c2h2final6 100 130 IPR013087 -
Seca12g05519 444 SMART c2h2final6 59 81 IPR013087 -
Seca12g05519 444 SMART c2h2final6 136 163 IPR013087 -
Seca12g05519 444 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 407 IPR031140 -
Seca12g05519 444 Gene3D Classic Zinc Finger 121 197 - -
Seca12g05519 444 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Seca12g05519 444 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Seca12g05519 444 FunFam protein indeterminate-domain 12-like 38 106 - -
Seca12g05519 444 Gene3D Classic Zinc Finger 37 102 - -
Seca12g05519 444 MobiDBLite consensus disorder prediction 198 218 - -
Seca12g05519 444 MobiDBLite consensus disorder prediction 288 309 - -
Seca12g05519 444 MobiDBLite consensus disorder prediction 1 26 - -
Seca12g05519 444 MobiDBLite consensus disorder prediction 198 235 - -
Seca12g05519 444 MobiDBLite consensus disorder prediction 1 48 - -
Seca12g05519 444 Coils Coil 349 397 - -
Seca12g05519 444 SUPERFAMILY beta-beta-alpha zinc fingers 58 156 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05519 Seca-Chr12 146282948 146286162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05519 23 443 C2H2 Transcription Factor Family AT2G01940 56.637 5.33e-159 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca12g05519 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05519 K25871 - gmx:100791007 654.825