Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05518 ATGGAGAACAACCCAGTTCAGCTTTTGCCTCATCTCACTGTGACACTCCTTGTGATGACAGTTTTGTTTCCTATGACTGAAGGTGGTGCAGCAGTTTCCTCCATCAAGACTGATGCACAGGCTCTTCTTATGTTCAAAAAGATGCTTAAGGATCCAAATGGTGTTTTGTCAGGGTGGCAGCTAAATAGGAATCCATGCAGCTGGTATGGAGTCTCTTGCACCTTAGGAAGAGTTACTCAGCTTGAAGTTAGTGGAAATAATAATCTTGCAGGGACTATTTCTCTTGATCCTCTGTCTTCTTTAGATATGTTATCTGTTTTGAAATTGTCTCTGAATTCATTTTCTGTAAATTCTACTTCTTTGCTTCAGCTCCCATATAGTTTGACACAGCTCGATCTATCCTTTGGTGGAGTTTCAGGTCCTGTCCCTGAGAACCTTTTCTCCAAGTGTCCAAATCTTGTTGTTGTGAATCTTTCTTACAACAACTTGACAGGTCCTATTCCTGAAAAATTCTTGCAAAATTCTGATAAACTGCAGGCCCTTGACCTCTCTTCCAACAATTTGACAGGATCAATTGCTGGTCTGAAAATTGAGTGCAATTCCTTGTTGCAACTTGATCTCTCTGGAAACCGTTTAGAAGACTCAATTCCAATTTCTTTGTCAAACTGCACCAGCCTTAAAAGTTTGAATTTAGCCAACAACTTAGTTTCTGGGGAAATCCCAAAAGCTTTAGGTCAGCTAACCAAACTACAGACTATGGATCTTTCCCATAATCAAATTACTGGCTGGATCCCTTTTGAATTGGGAAATGCATGTGCTTCCCTTTTAGAACTTAGACTTTCTTTCAACAACATCTCAGGCTCAATCCCACCTGGTTTCTCTTCTTGCACTTGGCTGCAACTTCTTGACATATCTAACAACAATATGTCAGGGGAATTACCAGAAATCTTTCAGAACCTTGGATCATTACAGGAACTGCGGTTGGGTAATAATGCTATCTCTGGGAAATTTCCTTCTTCAATATCTTCCTGCAAAAAATTAAGGATTGTGGATTTCAGCTCAAATAAAATTTATGGATCTATCCCCAGAGATTTATGTCCAGGGGCAGCCTCACTTGAGGAGCTGAGAATGCCAGACAATCTCATTTCAGGAGAAATCCCAGCTGAACTGTCAAAATGCTCACAACTGAAGACACTTGACTTTAGTCTGAACTATCTCAATGGTTCAATTCCTGATGAGCTTGGACAACTTGAAAATCTTGAGCAGCTAATAGCATGGTTCAATGGCTTGGAAGGAAGGATTCCACCAAAGTTGGGTCAATGCAAGAATCTCAAGGATCTTATACTGAATAATAATCACCTCAGTGGCAGAATTCCCCTTGAGTTGTTCAATTGCAGCAATCTTGAATGGATATCACTGACAAGCAATGAACTCACTGGTGAAATACCACGTGAGTTTGGCCTCTTGACAAGGTTAGCAGTTCTGCAGCTTGGAAATAACAGCTTCACAGGAGAGATACCAGGAGAGCTAGCAAATTGCAGCAGTTTGGTGTGGTTGGACTTGAACAGCAACAAGCTCACTGGAGAGATCCCTCCTAGACTTGGCCGGCAGCTAGGAGCAAAATCATTGTTTGGGATCCTGTCAGGAAACACTTTGGTGTTTGTAAGAAATGTTGGAAACTCATGTAAAGGGGTTGGAGGTTTGCTAGAATTCTCTGGAATTAGACCTGAAAGGCTCTTGCAGGTCCCAACACTGAGGACCTGTGATTTCACAAGATTGTATTCAGGTCCTGTCCTCAGCCTGTTTACCAAGTACCAGACTTTGGAGTATCTTGATCTTTCCTACAACGAGCTTCGCGGAAAAATCCCAGATGAATTTGGAGATATGGTGGCTTTGCAGGTTCTTGAATTATCTCACAATCAGCTATCTGGAGAAATTCCTTCATCACTTGGCCAGCTCAAAAATTTGGGTGTGTTTGATGCATCACATAATAGGCTGCAGGGTCATATCCCAGACTCATTCTCAAACCTCTCATTCTTAGTTCAAATTGATCTATCTAACAATGAGTTAACTGGGCAAATTCCATCAAGGGGACAACTAAGCACACTTCCAGCCTCCCAATATGCAAACAACCCAGGTCTTTGTGGTGTTCCATTGCCTGATTGCAAGAATGACAACAGCCAATCCACAACAAATCCAAGTGATGATGTTAGCAAAGGAGGCCGTAGAAGAGCAACTGCATCATGGGCAAACAGCATTGTCATGGGTATTCTCATTTCTGTTGCTTCTGTTTGTATTTTAATTGTGTGGGCAATTGCAATGCGTGCAAGGAGGAAGGAGGCTGAGGAAGTGAAGATGCTTAATAGCTTGCAAGCATGCCATGCTGCTACGACATGGAAAATTGACAAAGAGAAAGAGCCCCTAAGCATTAATGTGGCAACATTTCAGAGGCAGCTAAGGAAGCTCAAGTTCTCACAGTTGATTGAAGCAACCAATGGCTTCTCAGCAGCAAGCCTTATTGGTTGTGGTGGTTTTGGTGAAGTGTTCAAGGCCACACTCAAAGACGGGTCATGTGTTGCAATAAAGAAGCTAATTAGACTGAGCTGCCAGGGTGATCGAGAATTCATGGCTGAGATGGAGACCTTAGGGAAGATCAAGCATAGAAATCTTGTCCCTTTATTGGGATACTGCAAAGTAGGAGAAGAGAGGCTCCTTGTATATGAATACATGGAGTATGGAAGCCTAGAAGAGATGCTTCATGGGAGAACCAAGTCACGTGATCGACGTATCTTAACATGGGAAGAAAGGAAAAAGGTTGCAAGAGGTGCTGCTAAAGGACTTTGTTTCCTGCATCACAATTGCATCCCTCACATCATACACCGAGACATGAAATCAAGCAATGTGCTACTTGACCATGAAATGGAATCCAGGGTCTCAGATTTTGGAATGGCAAGACTGATAAGTGCCCTTGACACACATCTTAGTGTAAGCACATTAGCAGGAACACCTGGATATGTTCCACCAGAGTACTACCAAAGTTTCAGGTGCACTGCCAAGGGAGATGTTTACTCATTTGGAGTTGTAATGTTGGAACTGCTAAGTGGGAAACGCCCTACTGATAAGGAGGACTTTGGTGACACTAACTTGGTGGGGTGGGCCAAGATGAAGGTACGTGAAGGAAAACAAATGGAAGTAATTGACCCTGACTTGCTTTTGGAAACTCAAGGAACAGATGAAGCAGAAGTCAAAGAAGTGAAAGAGATGATAAGATATTTAGAGATTACTTTGCAGTGTGTTGATGACTTGCCTTCAAAGAGGCCAAGCATGTTGCAGTGA 3336 0.4245 MENNPVQLLPHLTVTLLVMTVLFPMTEGGAAVSSIKTDAQALLMFKKMLKDPNGVLSGWQLNRNPCSWYGVSCTLGRVTQLEVSGNNNLAGTISLDPLSSLDMLSVLKLSLNSFSVNSTSLLQLPYSLTQLDLSFGGVSGPVPENLFSKCPNLVVVNLSYNNLTGPIPEKFLQNSDKLQALDLSSNNLTGSIAGLKIECNSLLQLDLSGNRLEDSIPISLSNCTSLKSLNLANNLVSGEIPKALGQLTKLQTMDLSHNQITGWIPFELGNACASLLELRLSFNNISGSIPPGFSSCTWLQLLDISNNNMSGELPEIFQNLGSLQELRLGNNAISGKFPSSISSCKKLRIVDFSSNKIYGSIPRDLCPGAASLEELRMPDNLISGEIPAELSKCSQLKTLDFSLNYLNGSIPDELGQLENLEQLIAWFNGLEGRIPPKLGQCKNLKDLILNNNHLSGRIPLELFNCSNLEWISLTSNELTGEIPREFGLLTRLAVLQLGNNSFTGEIPGELANCSSLVWLDLNSNKLTGEIPPRLGRQLGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLLQVPTLRTCDFTRLYSGPVLSLFTKYQTLEYLDLSYNELRGKIPDEFGDMVALQVLELSHNQLSGEIPSSLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGQIPSRGQLSTLPASQYANNPGLCGVPLPDCKNDNSQSTTNPSDDVSKGGRRRATASWANSIVMGILISVASVCILIVWAIAMRARRKEAEEVKMLNSLQACHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAASLIGCGGFGEVFKATLKDGSCVAIKKLIRLSCQGDREFMAEMETLGKIKHRNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRTKSRDRRILTWEERKKVARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMESRVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLSGKRPTDKEDFGDTNLVGWAKMKVREGKQMEVIDPDLLLETQGTDEAEVKEVKEMIRYLEITLQCVDDLPSKRPSMLQ. 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05518 1111 SUPERFAMILY L domain-like 572 718 - -
Seca12g05518 1111 Pfam Leucine Rich repeat 177 191 IPR001611 GO:0005515
Seca12g05518 1111 SUPERFAMILY RNI-like 239 533 - -
Seca12g05518 1111 FunFam serine/threonine-protein kinase BRI1-like 2 795 909 - -
Seca12g05518 1111 ProSitePatterns Serine/Threonine protein kinases active-site signature. 958 970 IPR008271 GO:0004672|GO:0006468
Seca12g05518 1111 Gene3D Phosphorylase Kinase; domain 1 794 909 - -
Seca12g05518 1111 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Seca12g05518 1111 Gene3D Transferase(Phosphotransferase) domain 1 910 1111 - -
Seca12g05518 1111 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 464 1111 - -
Seca12g05518 1111 Pfam Brassinosteroid receptor island domain 544 602 IPR045381 -
Seca12g05518 1111 Pfam Protein kinase domain 837 1052 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05518 1111 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 368 553 - -
Seca12g05518 1111 Gene3D Ribonuclease Inhibitor 149 722 IPR032675 -
Seca12g05518 1111 SUPERFAMILY L domain-like 59 315 - -
Seca12g05518 1111 PRINTS Leucine-rich repeat signature 178 191 - -
Seca12g05518 1111 PRINTS Leucine-rich repeat signature 247 260 - -
Seca12g05518 1111 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 273 361 - -
Seca12g05518 1111 MobiDBLite consensus disorder prediction 722 736 - -
Seca12g05518 1111 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 196 272 - -
Seca12g05518 1111 ProSiteProfiles Leucine-rich repeat profile. 177 199 IPR001611 GO:0005515
Seca12g05518 1111 SUPERFAMILY Protein kinase-like (PK-like) 815 1111 IPR011009 -
Seca12g05518 1111 SMART serkin_6 834 1083 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05518 1111 ProSiteProfiles Protein kinase domain profile. 834 1111 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05518 1111 Gene3D Ribonuclease Inhibitor 37 148 IPR032675 -
Seca12g05518 1111 FunFam serine/threonine-protein kinase BRI1-like 2 37 148 - -
Seca12g05518 1111 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 569 726 - -
Seca12g05518 1111 Pfam Leucine rich repeat 202 260 IPR001611 GO:0005515
Seca12g05518 1111 Pfam Leucine rich repeat 466 526 IPR001611 GO:0005515
Seca12g05518 1111 Pfam Leucine rich repeat 299 357 IPR001611 GO:0005515
Seca12g05518 1111 Pfam Leucine rich repeat 601 642 IPR001611 GO:0005515
Seca12g05518 1111 MobiDBLite consensus disorder prediction 719 742 - -
Seca12g05518 1111 FunFam serine/threonine-protein kinase BRI1-like 2 910 1111 - -
Seca12g05518 1111 Gene3D - 547 603 - -
Seca12g05518 1111 ProSitePatterns Protein kinases ATP-binding region signature. 840 863 IPR017441 GO:0005524
Seca12g05518 1111 SMART LRR_typ_2 489 513 IPR003591 -
Seca12g05518 1111 SMART LRR_typ_2 272 296 IPR003591 -
Seca12g05518 1111 SMART LRR_typ_2 442 465 IPR003591 -
Seca12g05518 1111 SMART LRR_typ_2 514 537 IPR003591 -
Seca12g05518 1111 SMART LRR_typ_2 629 653 IPR003591 -
Seca12g05518 1111 SMART LRR_typ_2 417 441 IPR003591 -
Seca12g05518 1111 SMART LRR_typ_2 320 344 IPR003591 -
Seca12g05518 1111 SMART LRR_typ_2 247 271 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05518 Seca-Chr12 146244979 146248528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05518 16 1111 Receptor kinase-like Gene Family AT1G55610 48.604 0.0 996
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca12g05518 Pkinase 1.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05518 - - gmx:100789959 2023.44