Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05516 ATGTTGCTCTTACTATTGAAATTGCACAATGAGAAGGCCAAAGAAAGTTGGAAAAAAATAATTACTATGATGATCATATTCTTCTCAATGAAAATAACAACAAATCAATTTAGATGCTTTGATAAGCTTATGTTTTCTAGAAGCTCTTGCCAGTGTTTGCTTGCCTTTTTCTTGTTAAAATCTTCATGTTTGTTAAGTCTAAAAGAGTGGCTACAAACCATTGATTCTGTTGTAGGAAAATCATGGGTCCACCTCTTGCTTCTCTATGTATATGTTCAATTGTCTAGATGCATTGTAGTTGGAGCATTATTTCCCTTTCTAAGATATTTTGGATATGGTTTGGAATGGAAAGAAGCTATTATTCTCATCTGGTCAGGATTGCGAGGGGCAGTTGCCTTGTCACTTTCATTATCAGTTAAGCGTTCAGGCGGCAAATCAATTGAACTGACTCCAGAAACTGGAACAATGTTTGTTTTCTTCACTGGTGGAATTGTGTTTTTAACACTTATAGTGAATGGTTCAACCACACAGTTCATTTTACACTTCCTTGATATGGATAAGTTATCAACCGCTAAGAGGCGTATCCTGGATTTTACAAAGTATGAAATGTTGAACAAAGCATTAGAGGCTTTTGGTGAACTTGGAGATGATGAGGAACTTGGGCCTGCTGACTGGCCCACAGTGAAGAGATATATCTCCTGCTTAAATGACATTGAAGGTGAACGTGTTCACCCTCATGTTGCATCTGATAGTAACCTAGATCCTATGAATTTGAAAGACATACGAGTACGCCTTCTAAATGGTGTACAAGCTACATACTGGGAGATGCTTGATGAAGGAAGAATTACTCAAACAACAGCTAATATCCTAATGCTATCAGTGGAAGAAGCAATTGATCTGGCTTCATCTGAGCCTCTATGTGACTGGAAAGGCTTAAAAGCTAATGTTCACTTCCCAAGTTACTACAAGTTCCTCCAGTCCAGTATGTTACCACCAAAGTTAGTTACATACTTCACTGTGGAAAGGTTGGAATCTGCATGTTACATTTGTGCTGCATTTCTTCGAGCCCACAGAATTGCTCGACAACAATTACATGACTTCATAGGTGACAGTGATATTGCTTCTGCTGTCATCAATGAAAGTGTTGCAGAAGGAGAAGAAGCAAGAAAGTTCCTAGAAGATGTTAATATAACATACCCTCAGGTTCTGCGTGTTGTAAAAACAAGGCAAGCAACATATGCTGTGCTAAATCATTTAATTGAATATGTTCAAAACCTTGAGAAGGCTGGGATATTGGAAGAGAAAGAGATGCTACATCTTCATGATGCTGTCCAGACCGATTTAAAGAAATTACTTAGGAATCCTCCTTTGGTTAAGCTTCCTAAAATGAATAATATACATCCTATGTTGGGTGCCCTGCCATCTTCAGTTCGTGAACCACTTGCAAGTGGTACCAAGGAAGTGATGAAATTGCGTGGTGTGACACTTTACAAGGAAGGTTCCAAATCAAATGGTATTTGGTTAATTTCTAATGGAGTGGTGAAGTGGGAAAGCAAGATGATAAGAACCAAGCACCCTTTTTATCCAACTTTTACACATGGGAGCACATTGGGTCTTTATGAAGTGCTGACTGGAAGACCATATATCTGTGATGTCATCACAGATTCCATTGTGTTCTGCTTTTTTCTTGATGCTGATAAGATAACATCATGTCTTAAATTAGACCCTTCAATGGAAGACTTCTTATGGCAGGAAAGTGCTATTGTCCTTTCCAAACTATTACTTCCCCAGATATTTGAGAAACTAGCCATGCAAGATTTAAGAGCTCTTATTGCTGAAAGATCAGAAATGACCATATACTTAAGAGGGGAAACAATAGAAATCCCTTATCATTCAGTTGCCTTCTTACTGGAAGGATATGTCAAAACTCAAGATCGTCACGAACTGGTAACAGCACCAGCAGCCCTGCTTCCTTCACATGGAAATCGAAGCTTCCAAAATTTGGCAATTTCGGGTTCTAAGGAAGCTAGTTTTACTCATCAAGGATCTTATTATCTAGTCGAAACTAGAGCAAGGGTAATCGTGTTTGACATTGCAGCATTTGAGACTGATGCTGCTCTTGTTAGAAGGTCAAGTTCAATGTTATCACATGCCGTGGATCATCCCCATAGGTCATTCCTTAGAGAACATAGTGGTCTTATGAGTTGGCCTGAACATTTCTACAATCAGAAGAACCATAAGCAGAGTTCTGAAAGGATTGGGCAACAAGCCAATAGTTTGTCTGCAAGGGCAATGCAACTGAGCATTTATGGGAGCATGGTGGACATCCCTCGCTCGAGTCGAAGTTTGTCAATCAATCGCGCCAAACCACCACCTCAAAGTTTGTCATATCCAAACATTGTGTCAAACCAAGACCGTCCACTTGTTTCAGTCAAATCAGAAGGAGCTGCAACTGAGAAGAAGGACCATGAAGTGAAGGAGTTCACACGAGGTGTTACAGATCCTCCTCCACAAAGCACAGAACGAAGAGAACAACAACATGGAGATGATTCAAGTGATGATTCTGCTGCTGAAGAAGATATTATTGTGAGAATTGATTCACCAAGCACACTCTCATTTCGCCATCCTTCTTGA 2634 0.396 MLLLLLKLHNEKAKESWKKIITMMIIFFSMKITTNQFRCFDKLMFSRSSCQCLLAFFLLKSSCLLSLKEWLQTIDSVVGKSWVHLLLLYVYVQLSRCIVVGALFPFLRYFGYGLEWKEAIILIWSGLRGAVALSLSLSVKRSGGKSIELTPETGTMFVFFTGGIVFLTLIVNGSTTQFILHFLDMDKLSTAKRRILDFTKYEMLNKALEAFGELGDDEELGPADWPTVKRYISCLNDIEGERVHPHVASDSNLDPMNLKDIRVRLLNGVQATYWEMLDEGRITQTTANILMLSVEEAIDLASSEPLCDWKGLKANVHFPSYYKFLQSSMLPPKLVTYFTVERLESACYICAAFLRAHRIARQQLHDFIGDSDIASAVINESVAEGEEARKFLEDVNITYPQVLRVVKTRQATYAVLNHLIEYVQNLEKAGILEEKEMLHLHDAVQTDLKKLLRNPPLVKLPKMNNIHPMLGALPSSVREPLASGTKEVMKLRGVTLYKEGSKSNGIWLISNGVVKWESKMIRTKHPFYPTFTHGSTLGLYEVLTGRPYICDVITDSIVFCFFLDADKITSCLKLDPSMEDFLWQESAIVLSKLLLPQIFEKLAMQDLRALIAERSEMTIYLRGETIEIPYHSVAFLLEGYVKTQDRHELVTAPAALLPSHGNRSFQNLAISGSKEASFTHQGSYYLVETRARVIVFDIAAFETDAALVRRSSSMLSHAVDHPHRSFLREHSGLMSWPEHFYNQKNHKQSSERIGQQANSLSARAMQLSIYGSMVDIPRSSRSLSINRAKPPPQSLSYPNIVSNQDRPLVSVKSEGAATEKKDHEVKEFTRGVTDPPPQSTERREQQHGDDSSDDSAAEEDIIVRIDSPSTLSFRHPS. 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05516 877 SUPERFAMILY cAMP-binding domain-like 467 583 IPR018490 -
Seca12g05516 877 ProSiteProfiles cAMP/cGMP binding motif profile. 469 564 IPR000595 -
Seca12g05516 877 MobiDBLite consensus disorder prediction 815 830 - -
Seca12g05516 877 MobiDBLite consensus disorder prediction 782 809 - -
Seca12g05516 877 PANTHER SODIUM/HYDROGEN EXCHANGER 75 533 IPR018422 GO:0006812|GO:0015385|GO:0016020|GO:1902600
Seca12g05516 877 MobiDBLite consensus disorder prediction 782 877 - -
Seca12g05516 877 MobiDBLite consensus disorder prediction 840 861 - -
Seca12g05516 877 Gene3D Jelly Rolls 462 587 IPR014710 -
Seca12g05516 877 FunFam Sodium/hydrogen exchanger 7 457 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05516 Seca-Chr12 146201581 146212177 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05516 79 875 Antiporters AT2G01980 59.777 0.0 932
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05516 K14726 - gmx:100789429 1325.84