Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05506 ATGACGAAATCTGAATTTGCCTTAGACATTATCTCGGATGATGATAAGGATCCAATCTTTCATTCTATCAGTGAATCTGATGATTTAAATGGTGGAGAGGAACATGATTTTTGTGACAAGACTAACAAAGAAGAGATTGGTTCACGGGATGATCAAAGCCAGAAAGATGACGTTACGAGGGATATTAGGGGTAATGTTATTATGAGGCAGTTTGTTTGCAATAGGGAGAGACTAAGAAATAAAAAGCACTTTATGAGAGTGGATAGGAAGAGAGAACATAGGCCACTTACCCGTACAAGTTGTCAAGCCAAGCTTCGTGTTCACTACCATCACAATAGTTTAAAATGGAAAGTAGTATCATTTGAGCAGTGTCATAACCATGAGCTTACTCCATCTAGATATGTTCACCTACCCCCTGCTTATCGTGGGTTAACAGATTGTGATAAGGCGCAGGTTGATCGTTTGCATGGTCATGGTCTTAGAGGTTGTCATATCATGGGCTACCTGGTGGCTCAAAAGGGGGGTTATTGTCGTGTAGGTTTTACAAAGAAGGACATATATGGTACAAATGACGATAGTAAAAAGGATAAGGACTTATCACATTCAGAAAGCAGTGGTGACATTGCAGCAAATGATATTGAGAAAGATGCAATGGATACTGGTGAGGATAATGGAAAGGAAAGTAATGATGATGAGACTAAGGCTGAGGATGAAATTGGACAGGAAAGAGACAGACAAGAAAAAAATGATCAGTTTGACTGTACTAGGCATATTAATGTAAAAGACAAGTTGAGAGCACTGTCTAAAAAGAAGGAAAAGACAATTAGTGAAGAAAATAAAGCAAAACATGAAAAGGAACCGACAATCAATGTAGGTGGCTGTTTAAATGTAGAAAAAGCTGAAAATTGTGAACTGCCTCCTATGGTCCCTAAGGGAAAGGAAATGAGTCAAGAGAAGAAAGCAAAGCATTCTAAGGAACCGGCATACAATATAGCATCATCTTCAAAAGGAGTAAAATTTGAAAATTCTCAAGTGTCACCTCCAGTCCAGCCTATGGCCCCGCCCATGCATTTTCCTAGTAATGGGTATGGAAGCTTCAATCAAGGGTATCCAATATTTCCAAACTTTAGTGGTAGCCCGATTCAGACTCAACATAATGCAGTCCCTGTTTACGGACACAATATGCATTATCCTTTCTACCACCATAATGATCAACTTCCAATTTATCCGCAAGGACCCCAGGTAATGAAGAGTGGCGATCAAAGAAGTGGATATGAAGAAAAACGTTAA 1290 0.3922 MTKSEFALDIISDDDKDPIFHSISESDDLNGGEEHDFCDKTNKEEIGSRDDQSQKDDVTRDIRGNVIMRQFVCNRERLRNKKHFMRVDRKREHRPLTRTSCQAKLRVHYHHNSLKWKVVSFEQCHNHELTPSRYVHLPPAYRGLTDCDKAQVDRLHGHGLRGCHIMGYLVAQKGGYCRVGFTKKDIYGTNDDSKKDKDLSHSESSGDIAANDIEKDAMDTGEDNGKESNDDETKAEDEIGQERDRQEKNDQFDCTRHINVKDKLRALSKKKEKTISEENKAKHEKEPTINVGGCLNVEKAENCELPPMVPKGKEMSQEKKAKHSKEPAYNIASSSKGVKFENSQVSPPVQPMAPPMHFPSNGYGSFNQGYPIFPNFSGSPIQTQHNAVPVYGHNMHYPFYHHNDQLPIYPQGPQVMKSGDQRSGYEEKR. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05506 429 MobiDBLite consensus disorder prediction 16 60 - -
Seca12g05506 429 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 63 202 - -
Seca12g05506 429 Pfam FAR1 DNA-binding domain 62 130 IPR004330 -
Seca12g05506 429 MobiDBLite consensus disorder prediction 190 256 - -
Seca12g05506 429 MobiDBLite consensus disorder prediction 409 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05506 Seca-Chr12 145989350 145994662 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca12g05506 FAR1 2.2e-12 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05506 - - ccaj:109792835 210.69