Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05502 ATGTCATTGGCTGCTCCAAGTTCCCTTTTGAAGGTGGAGGAAATACAAGGAAGAGGGAGGGGGATGGTAGCATCTCAGCCTCTTAAAGCTGGCCAAGTTATCCTCAGAGACTCGCCAATCCTGCTGTATTCTGCCTTGCCCTTTGCCACACAGTCTTTGACATCATCCTCTGCATCGGCCTCATGCTTCTGTGACCACTGCTTCAAAACCTTGTCACCATCTTTACAGCAAGACTCTTCATCATCAGCAGTTCTATGCCCTTCTTGTTACCACTATCGCTTTTGCAGCTCAAGTTGTCTCTCAAAGGCACTGAACTCCTCCCATTGTTCTTGGGTATGTCAAGCATTATCACGTCTCCAAGCCAATTCTCTACTGCTTGAACAGCCTCTTGAGCGCCAAGTCCAAGCTCGTTTTCTCATTGCTGCCTACAGTCTTGCCAATATGTCCCCCTCAAACTTTCAAATGTTGCTATCTCTTCAGGGTTCTCCTGATGATGCTACTATTGCTGCAGCTCAGTTCCTTCACCCCCTTATTTCATCCCTCTGTTCACTTGCTCTCATTAGCCCTCAGAATGGGTTTTCTTTGGAACTTACTTCTGCACTTCTGTCCAAGGACAAGCTCAATGCCTTTGGCATAATGCAGCCCTTCTCTGAGGGTGATGAGCAGAGGTCTGTCAGAGCTTATGGTATTTACCCCTACGCCTCCTTTTTTAACCATGATTGCCTTCCCAATGCCTGCAGATTTGATTATGTGGACACTAATCCACCTGATGATAGCCATAATACCGACATTATTATTAGGATGATTCATGATGTTCCCCAAGGTAGAGAGATCTGTTTGAGTTATTTCCCTGTGAATGAAAACTATTCTAGTAGGCAGAAGAGATTGATAGAAGACTATGGCTTCACCTGTAATTGTGATCGATGTAATGTTGAATCAAATTGGTCAGATAATGACAGTATTGAAGATAATGCAGAGGATGAAGAAGAGGTTATGGATGAGGACCAATATGAAAATATGGCAGCATCAGACACTGACGATAATCCCAATGGAGATAATAATGATTTCCCACATGCTTATTTCTTTCTAAAATACATGTGTGACAGAACAAATTGCTGGGGAACTTTAGCTCCTTTACCCCCACAGGGTGATACTCCATCTAATGTCATGGAATGTAATGTTTGTGGTAAATTGAAGAGTGATGATGACTTTGATGTTGATAAAGGGGAAGATGAAGTTCCCATGGAAGACTGA 1254 0.4338 MSLAAPSSLLKVEEIQGRGRGMVASQPLKAGQVILRDSPILLYSALPFATQSLTSSSASASCFCDHCFKTLSPSLQQDSSSSAVLCPSCYHYRFCSSSCLSKALNSSHCSWVCQALSRLQANSLLLEQPLERQVQARFLIAAYSLANMSPSNFQMLLSLQGSPDDATIAAAQFLHPLISSLCSLALISPQNGFSLELTSALLSKDKLNAFGIMQPFSEGDEQRSVRAYGIYPYASFFNHDCLPNACRFDYVDTNPPDDSHNTDIIIRMIHDVPQGREICLSYFPVNENYSSRQKRLIEDYGFTCNCDRCNVESNWSDNDSIEDNAEDEEEVMDEDQYENMAASDTDDNPNGDNNDFPHAYFFLKYMCDRTNCWGTLAPLPPQGDTPSNVMECNVCGKLKSDDDFDVDKGEDEVPMED. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05502 417 Gene3D - 127 209 - -
Seca12g05502 417 Gene3D SET domain 21 309 IPR046341 -
Seca12g05502 417 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHR2 1 410 IPR044238 -
Seca12g05502 417 Coils Coil 318 338 - -
Seca12g05502 417 SUPERFAMILY SET domain 8 305 IPR046341 -
Seca12g05502 417 Pfam SET domain 19 282 IPR001214 GO:0005515
Seca12g05502 417 CDD SET_SMYD 207 309 - -
Seca12g05502 417 Gene3D - 63 122 - -
Seca12g05502 417 ProSiteProfiles SET domain profile. 8 283 IPR001214 GO:0005515
Seca12g05502 417 SMART set_7 8 289 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05502 Seca-Chr12 145955838 145959384 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca12g05502 SET 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05502 - - gmx:100783406 720.694