Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05493 ATGGTTGCCCAACAGCCGCAACTTCAGCTTCAGCCTCAGCAGCCTACACCCTCTGCCCAAGATGAGGCCTTGAAGAGGAACACCGATTGCGTCTACTTTCTTGCATCTCCCTTGACATGCAAAAAGGGAAATGAATGCGAGTACCGCCATAGTGAGTATGCTCGGGTCAATCCTAGGGATTGCTGGTATTGGTTGAATGGCAATTGCTTGAATCCCAAATGTTCTTTTCGTCATCCGCCTCTTGATGGCTTGATAGGAACACCAACTGCCGCAGCTGCTGGTGGACCATCTGTACCCCCATCACAGATTGCAACAACGCCAGCAACACATGCACCACGTTATAATTCTAGTAAACAAGCTGTCCCTTGCATTTTCTTCCAAAAGGGGCTTTGCTTAAAAGGTGACAGGTGTGCCTTCTTGCATGGGCCAAATCCTAATACTAGCAATAAAGTAGGTACTCAGGGCCCAATGACCAGCCAGGGAGCTGAGAATTCAAGTTTTAAGAAGTCTTTTGGCAGCATTGAAAAATATACACAGGAAAGGAAAACTTCCCAAGGAAATGTTGCAAGGTCTGTTGGAGGTGCTGAGGCTAAACCTGCCCAAAAAGTTGAAACTGCTCTACAGAAAAATGTGTTTGAATTGGAGAAGCATGTACCCCCGCCACCACCTGTGGGATTTGATAACGAGGCTTCAAGATTTAAGATAAGCTCTCCACCAGTGACCAATGGGCCCTCTGCAGCCCGGACCAATCGTGTGCATCAAGCTCGTTTGCCAGATGATCACAGTTTCCATAGTGGTAAGGACAGTGATGAGTTTCTCAGAGAGTCTTCTCCTGGGTTTGATGTTCTTGTAGCTGATGAGCTTAGGAATTCTGATTACTATCATGGTGAAGATGAATATGGTAAAGCAAGAGGTCAAGATGAAAGAAACTTAGACTCTTTGAATGAATATGATATGGGACATTCTGCTGATTATAGTTTGGCAGCTGATATTGATCGAGAAAGATTTCGTGTGCCTCAAGGTTATGACTCATATGATCACATGCAAGAGCCATATGTTTGGGAGCAGCATAGAAAGGCATCAGCCCATTTAGAAAGAAGGACTCATCGCAGATCTGGCAGTCCTGACAATGCTGAGGTCTCAGATCTCCGACATCATTTATCCAAGCGCAGGAAGGTCAATGGTTTGAAATCTGTTGTCACTCATGATTATGCCCTTGAGAGCCCTGGTGAGGAACAAAGTAACCGGTTCTTCTCTCGGAAGGATTCACCTCAGTTGCCTTTGAATGAGAGCTCCCTCAGTAACCGTTTTCGAGGCAGAATAAAACTTCCAGCAAATGGGGGTGATAGTCATGTAGAGAGGGACTTAGACAGAGGAAGAATTAGGGGCAGATTGTCATCTGGAAGGCCACAAGCCACTCACCAGGGAAGGATCCAAGATAGAATAAGGGGAAGATTGCAAGATGATGAGAGGAGAAACTTCAGGGGGAGAGAACTAATGGGAGAGAGAGGTGATTTTGCTGGTCCAAAAAGTCTTGCCGAACTTAAAAATGGGAGGAACACTGAGAATAAGGAGCAACAATCGTTGGGAAAGAGAAAAAGTCTAAGGGATCACCAACAATCTGAAGATGATTTTCAGTTTGAAGGTCCAAAACCTCTTAGTGAAATTCTGAAGCAGAAGAGAGGAGTTGGAGGTGGTGCAGTCTCCCAGAGTGGCAAATCATCTGAAGATAAAAATAGAGAAAGTACCAATAGCTCATATCATACATCTGTTGTAAACACACACAATGGAGCATTGCCTGAGACCAAGGAAAATGTCAAGAGCCATTTGCTGGTTAATGAAGAAGAATCCAAGACTGATGCTGATGGAAGAGACATTGATAATACTGATGTAGCTCATGGTCAATCATCTGAGGATGGAATGATCTACGATGAAGCTGCAGAAGATCAGGAGTATGAAGGTGATGATCAGAGAGAAGGGGACTATGATTATGAGCAAGTTGATGAGGGGGAGTATGACTATGAACAAGTTGATGAGGGTGAAAATCAAGAGCAAGAATACATGGATGATGAAGATGGGGATGACTTTGCTAAGAAGATTGGTGTCATTCTTACATAA 2118 0.4443 MVAQQPQLQLQPQQPTPSAQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCWYWLNGNCLNPKCSFRHPPLDGLIGTPTAAAAGGPSVPPSQIATTPATHAPRYNSSKQAVPCIFFQKGLCLKGDRCAFLHGPNPNTSNKVGTQGPMTSQGAENSSFKKSFGSIEKYTQERKTSQGNVARSVGGAEAKPAQKVETALQKNVFELEKHVPPPPPVGFDNEASRFKISSPPVTNGPSAARTNRVHQARLPDDHSFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEYGKARGQDERNLDSLNEYDMGHSADYSLAADIDRERFRVPQGYDSYDHMQEPYVWEQHRKASAHLERRTHRRSGSPDNAEVSDLRHHLSKRRKVNGLKSVVTHDYALESPGEEQSNRFFSRKDSPQLPLNESSLSNRFRGRIKLPANGGDSHVERDLDRGRIRGRLSSGRPQATHQGRIQDRIRGRLQDDERRNFRGRELMGERGDFAGPKSLAELKNGRNTENKEQQSLGKRKSLRDHQQSEDDFQFEGPKPLSEILKQKRGVGGGAVSQSGKSSEDKNRESTNSSYHTSVVNTHNGALPETKENVKSHLLVNEEESKTDADGRDIDNTDVAHGQSSEDGMIYDEAAEDQEYEGDDQREGDYDYEQVDEGEYDYEQVDEGENQEQEYMDDEDGDDFAKKIGVILT. 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05493 705 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 121 143 IPR000571 GO:0046872
Seca12g05493 705 SUPERFAMILY CCCH zinc finger 118 142 IPR036855 GO:0046872
Seca12g05493 705 MobiDBLite consensus disorder prediction 1 22 - -
Seca12g05493 705 ProSiteProfiles Zinc finger C3H1-type profile. 117 144 IPR000571 GO:0046872
Seca12g05493 705 SMART c3hfinal6 57 80 IPR000571 GO:0046872
Seca12g05493 705 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Seca12g05493 705 SMART c3hfinal6 25 52 IPR000571 GO:0046872
Seca12g05493 705 Pfam Zinc-finger containing family 25 79 IPR041686 -
Seca12g05493 705 ProSiteProfiles Zinc finger C3H1-type profile. 55 81 IPR000571 GO:0046872
Seca12g05493 705 Gene3D - 16 81 - -
Seca12g05493 705 Gene3D - 108 180 - -
Seca12g05493 705 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 21 703 - -
Seca12g05493 705 MobiDBLite consensus disorder prediction 584 601 - -
Seca12g05493 705 MobiDBLite consensus disorder prediction 517 549 - -
Seca12g05493 705 MobiDBLite consensus disorder prediction 363 386 - -
Seca12g05493 705 FunFam Zinc finger CCCH domain-containing protein 17 18 81 - -
Seca12g05493 705 MobiDBLite consensus disorder prediction 407 695 - -
Seca12g05493 705 MobiDBLite consensus disorder prediction 180 201 - -
Seca12g05493 705 MobiDBLite consensus disorder prediction 476 504 - -
Seca12g05493 705 ProSiteProfiles Zinc finger C3H1-type profile. 24 53 IPR000571 GO:0046872
Seca12g05493 705 MobiDBLite consensus disorder prediction 447 464 - -
Seca12g05493 705 MobiDBLite consensus disorder prediction 642 691 - -
Seca12g05493 705 MobiDBLite consensus disorder prediction 607 632 - -
Seca12g05493 705 MobiDBLite consensus disorder prediction 419 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05493 Seca-Chr12 145824486 145828295 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca12g05493 zf-CCCH_3 6.7e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05493 - - gmx:102669253 1028.85