Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05488 ATGGCCAACAGAGTTCAAATTCCTACCAGCAACTCGTCACTTATTGCCATGATTGCAGATGAGGATACTGTAGTTGGGTTTCTATTGGCTGGAGTGGGAAATGTTGACATACGTAGGAAGACAAATTACCTTATTGTGGATTCAAAAACAACTGTTAAACAAATTGAGGATGCATTCAAAGAATTCACAACAAGGGAGGATATTGCAATTGTGCTGATTAGCCAATATGTTGCAAATATGATAAGGTTTTTGGTTGATAGTTATAGCAAGCCTGTTCCTGCAATACTTGAAATCCCTTCTAAAGACCACCCTTATGATCCTGCGCATGATTCAGTTCTTTCACGAGTAAAGTATCTCTTTTCTACGGAATCAGTGGCATCTGGGAGACGCTAA 393 0.3944 MANRVQIPTSNSSLIAMIADEDTVVGFLLAGVGNVDIRRKTNYLIVDSKTTVKQIEDAFKEFTTREDIAIVLISQYVANMIRFLVDSYSKPVPAILEIPSKDHPYDPAHDSVLSRVKYLFSTESVASGRR. 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05488 130 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT F 1 126 - -
Seca12g05488 130 Gene3D ATPase, V1 complex, subunit F 9 122 IPR036906 GO:0034220
Seca12g05488 130 FunFam V-type proton ATPase subunit F 9 122 - -
Seca12g05488 130 Pfam ATP synthase (F/14-kDa) subunit 15 116 IPR008218 GO:0034220|GO:0046961
Seca12g05488 130 PIRSF V-ATP_synth_F 3 123 IPR005772 GO:0033180|GO:0046961|GO:1902600
Seca12g05488 130 NCBIfam V-type ATPase subunit F 11 124 IPR005772 GO:0033180|GO:0046961|GO:1902600
Seca12g05488 130 SUPERFAMILY AtpF-like 15 99 IPR036906 GO:0034220
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05488 Seca-Chr12 145785674 145790026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05488 1 126 Primary Pumps ATPases(2) AT4G02620 86.508 2.59e-80 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05488 K02151 - gmx:100305531 247.669