Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05484 ATGGCATCTTCCCAGGTTGAAATCGCTTCCTCTTCTCCATTTGGTTGCGTTTTGATGGACCATAATCGTCGTGATTCATCACAAAACCAGAACACTCAAAAACCAATCAACAATTCATCCATTTGGGCCTCAAGAATTGCTAAGAACAACCTTGAAAGCCTAAAACTTGACAAAATTTGCAGAAACAACAAAGATGGTTCTTCTTCTTCATTGTCTGCATTGATGAGCCCGAGACACTCAAGGATCATTGATCGATGGGCTGCAAGACAAGCTCGAGAAGTGGTGACAACACTTGAGAAAGAGGTTGAGGTGTTTGAAAATTTTCCTTCAAGATCATGTAGTTTCAATTCTAGGAGGGAAGTTTCTGTGTCCCCTCCTCGTTCTGATGACTCATCTGATAGTGAAATCTCAAACCTTGGAGCTTCTTCTCTTGTTCAGATATGGGAAAAGAGGCTCAACAAATCCAACAGCACCAAACCAAATGCACTAGTTTCACCTGGAAGGACTAGTCTTGATAATGCAAGCTGCAATGAAAATGCATGTTCTGTGGAAGAACAATGTAGGGTCTCAGAAGAAGGGGAATCCAATGATGAACCCCAAGGTAATGAGGAATCATCCCCAGATTGGGAATTTGATAAAACAGGACAAAGTGATCAATCATGTTCATCAAAATTGCAGAGTTCTGATGCTGCTGAAAGAGAAAGGGGAAGGGTTGCAAATATTATCAAGAGACTCTCGGTAACAAATCAAATGCAAAGTCTAGTGTCATCACTGAATGATGACAATGCTCAAGAGCAATGTAGTGGTGTGACAGGTTCTCCATATAGAGAACACAAAGCTTTTGGTCAAGTCATAACTTGCCCACGTATTAGGGGGCGCCAAGCATTCAATGATTTGATTATGCAGTTTGAAAGTGACCGGCATGGAGAGCTCAAAAATCTTGCAGAGAGGGGATCAGTTTCCAAGTTCACACAAAGAGGTCGTATTCAGTCATTGCTTCGACTTAGATTATTGCAACGTGGAGTAGCAGTTTTTGATCAATCCCACCAGAAATCATCAGTATCTGAAGTGAATAGACAGCAACAAGGATCAGCAATTATGCAACTAAGGGAAAGATTTAAGGTAAGAAATGAACATAGAACTTCAGCTCTGGCAGAAGTATCTGATTCAAGAAGTCCTAGTAGAGAGATAGTAAACAGCACCAGCACCAGCACCACACAAATGGATAACTTCCCCACCTCTAATCAGCTCAGAAAAGATACTCATTACAGGACAGTTTACAGCACTGGTGTTCACTGTAAAGAAACTACACAGAACTCAGTGCCTCAAACTAGTGCAGATGGCAAAGAACAAGCTCATCCAAGTTCAGATGCCACATTCCAAGGATCATTCTTTGAAGCTCAAAATGTTGATACAAAAGAAACTATTGGGGCATCTTCATCCATTGCTGATTCAAATGCAAATGAGACGGCAAATAAGGAAGAGGCAAAGGAACAACAGTATGCTATTGCTGAAACAAGTTATGATGAGATAGTAGAAGAGGATGAAGCCAGTGACCAGAATTATGATGAAGCTCGTTATGACTGGACAAGTCATATTTCTCGGCCTAGGAGCTATTGGGAAGAACTCAGGCAAGAATGGTATAGGGAAATGCTTGATTTTGGTTCAGACAATGATGAGAGACGTAAACTCCTTGAAAGAAGAACAGTATCAACTGTCCTTTCTAGTGACTTCCGGGAAAGGATGGATAGACTAATGAAGTCTCATAAGGGAACACAAACACACCTAGTCAATAGTCAATATGATCAGGAAGAGCAAGACCAATTGATGGCATTTTTTAGAGAACGCTTGGGTTATAGAGGCAGTGATCAAGAAGATGGAAGAGATAGAGGGGAAGAAGGAGAGGTTAGGAGGAGAAATGAGGAAGAGGAAGAGGAGGAAGAGAAGAGTATCAGTAGTGGTTCAGAACATGAACTTGGTGATTATTTCAATCAATCCTCACCATCAATGCATACACCTTCCTCAACATGGAGTTATAGAGACAATGATGCTGGTGATGATTCTGATAGAGTTGCATCTGTATCCTCACCACTACCTTCTCAATCTCAGTCTTTCTATCAAGATAGACGGCAGTACTCTTCATCCACAAATCATCATTCCATTGAAATGGAATTTATATATGATATGAGAGGGCAAATGGATCAACTTTTTCATGAGATGTCTGAGCTAAGGAAATCATTAAAGATCTGCATGGACATGCAGATGCAATCACAACAATTCAAGAATCAAGAGGTTCACACAGTTAAGGAAGAAAGGAAGAAGTTCCATAACAAGACACCAAAGAAAGGCAACTGTTGCATTTGCCATGAGAAGAAAGTAAACTCAGTATTATACAGATGTGGGCACATGTGTGCATGTCTCAAGTGTGCCAATGAGTTACAATGGAACAGTGGAAAATGTCCAATATGTCGAGCTCCAATAATAGATGTTGTCCGAGTATATACTAACACAGAACTTTTAGTGGTTGACAGAGTCTAG 2538 0.4066 MASSQVEIASSSPFGCVLMDHNRRDSSQNQNTQKPINNSSIWASRIAKNNLESLKLDKICRNNKDGSSSSLSALMSPRHSRIIDRWAARQAREVVTTLEKEVEVFENFPSRSCSFNSRREVSVSPPRSDDSSDSEISNLGASSLVQIWEKRLNKSNSTKPNALVSPGRTSLDNASCNENACSVEEQCRVSEEGESNDEPQGNEESSPDWEFDKTGQSDQSCSSKLQSSDAAERERGRVANIIKRLSVTNQMQSLVSSLNDDNAQEQCSGVTGSPYREHKAFGQVITCPRIRGRQAFNDLIMQFESDRHGELKNLAERGSVSKFTQRGRIQSLLRLRLLQRGVAVFDQSHQKSSVSEVNRQQQGSAIMQLRERFKVRNEHRTSALAEVSDSRSPSREIVNSTSTSTTQMDNFPTSNQLRKDTHYRTVYSTGVHCKETTQNSVPQTSADGKEQAHPSSDATFQGSFFEAQNVDTKETIGASSSIADSNANETANKEEAKEQQYAIAETSYDEIVEEDEASDQNYDEARYDWTSHISRPRSYWEELRQEWYREMLDFGSDNDERRKLLERRTVSTVLSSDFRERMDRLMKSHKGTQTHLVNSQYDQEEQDQLMAFFRERLGYRGSDQEDGRDRGEEGEVRRRNEEEEEEEEKSISSGSEHELGDYFNQSSPSMHTPSSTWSYRDNDAGDDSDRVASVSSPLPSQSQSFYQDRRQYSSSTNHHSIEMEFIYDMRGQMDQLFHEMSELRKSLKICMDMQMQSQQFKNQEVHTVKEERKKFHNKTPKKGNCCICHEKKVNSVLYRCGHMCACLKCANELQWNSGKCPICRAPIIDVVRVYTNTELLVVDRV. 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05484 845 MobiDBLite consensus disorder prediction 212 227 - -
Seca12g05484 845 MobiDBLite consensus disorder prediction 618 655 - -
Seca12g05484 845 MobiDBLite consensus disorder prediction 657 681 - -
Seca12g05484 845 MobiDBLite consensus disorder prediction 434 457 - -
Seca12g05484 845 MobiDBLite consensus disorder prediction 380 421 - -
Seca12g05484 845 MobiDBLite consensus disorder prediction 386 421 - -
Seca12g05484 845 Pfam Zinc finger, C3HC4 type (RING finger) 782 829 - -
Seca12g05484 845 PANTHER BNAC05G24000D PROTEIN 1 836 - -
Seca12g05484 845 SUPERFAMILY RING/U-box 784 831 - -
Seca12g05484 845 CDD mRING-HC-C3HC5_NEU1 782 834 - -
Seca12g05484 845 ProSiteProfiles Zinc finger RING-type profile. 785 824 IPR001841 -
Seca12g05484 845 MobiDBLite consensus disorder prediction 187 234 - -
Seca12g05484 845 MobiDBLite consensus disorder prediction 22 40 - -
Seca12g05484 845 MobiDBLite consensus disorder prediction 693 713 - -
Seca12g05484 845 MobiDBLite consensus disorder prediction 618 713 - -
Seca12g05484 845 MobiDBLite consensus disorder prediction 19 40 - -
Seca12g05484 845 MobiDBLite consensus disorder prediction 116 137 - -
Seca12g05484 845 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 764 844 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05484 Seca-Chr12 145720705 145725099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05484 785 837 C3H Transcription Factor Family AT3G06140 39.623 8.44e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05484 - - aprc:113855868 893.649