Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05482 ATGGCAGCAATATGGAGGATTTCAACATTTGCTCTAGTTATGTTCCTTGTGTGCTTTTCTTCTATGCTACAAGTCCTTGGCCAAGGCAACTTAGACAAAGATGCAACTTTGAGAGTGCTTTTGGAAGTGAAGAAGTCTTTTGTGCTAGACCCACAAAATGTTTTGAGTGATTGGTCAGAGAACAACACGGAGTACTGTAATTGGAGAGGGGTGTCATGTGGATTGAACTCAAACTCTTTGGATGATGACTCGGGACAAGTGGTTGGACTCAACCTCTCTGACTCGTCACTCACTGGGTCAATATCACCTTCACTCGGTCGTTTGCAAAACCTGCTCCACCTTGATCTCTCCTCCAATAATCTCATGGGTCCCATTCCACCAAATCTCTCTAACCTCACTTCCTTGGAATCTCTGCTTCTCTTCTCTAACCAACTCACTGGTCACGTTCCTGCTGAGCTTGGCTCGCTCATGAGTCTCCGAGTCATGCGACTCGGTGACAATGCATTAACGGGTATGATTCCCGCGTCTCTTGGGAACTTGTTTAACCTGGTCAACCTTGGTTTGGCTTCATGTGGACTCACCGGGTCGATTCCACCTCAACTCGGGCAACTCAGTCTACTGGAGAATCTGATTCTGCAAGACAACGAGCTGATGGGACCGATTCCAACCGAGTTGGGGAACTGTTCGAGTCTCACCGTCTTCACTGCTGCTGACAACAAACTCAATGGCTCAATTCCGAGTGAACTGGGTCAACTCAAGAATCTACAAATTCTCAACCTTGCCAACAACAGCCTTTCAGGGCAGATTCCGAGTCAACTCGGTGATATGAGTGAGCTTGTATACATGAATTTCATGGGGAACCAGCTTGAGGGTGCTATTCCACCGTCTCTAGCTCAACTGGGTAATCTTCAAAACCTGGACTTGTCCATGAACAAGCTCAGTGGAGGAATTCCTGAAGAGTTTGGCAACATGGGTCAGTTAGCTTACCTGGTTCTGTCTGGTAACTACCTTAATGGTGTCATACCAAGAACCATATGTTCCAATGCAACAAGTTTGGAACACTTGATGCTGTCAGAAAGTGGACTTCATGGTGAGATCCCAGCTGAGTTGGGTCTGTGCCAGTCACTGAAGCAACTTGATTTGTCTAACAATTCACTCAATGGGTCCATACCTCTTGAGCTTTATGGGTTGGTTGGGTTAACTGATCTCTTGCTCAACAACAACAGCTTGATTGGTTCCATCTCTCCCTTCATAGGGAACCTCAGTAGCTTGCAGACACTTGCTTTTTTTCACAACAATTTGCAGGGTGCTCTGCCCAGAGAGATTGGAATGCTTAGCAAGTTGGAAATCTTATATCTTTATGATAATCAATTATCAGGGGATATACCAATGGAGATTGGCAATTGTTCAAGCTTGCAAATGATTGATTTCTTCGGAAACCGTTTCAGCGGGGAAATTCCCATCACTATTGGAAGGCTGAAAGAGTTGAATTTCCTTCACCTTAGGCAGAATGAGCTTGTGGGTGAGATTCCAGCCACGTTGGGTAACTGTTATAAATTGAACATCCTGGATTTGGCGGACAATCAGCTCTCTGGTGCAATTCCTCCAACATTTGGATTCCTCAAGGCATTGCAGCAGCTCATGCTTTATAACAATTCTCTTGAAGGTAACCTCCCTCACCAACTGATAAATGTAGCAAACTTGACCAGAGTGAATCTCTCAAAGAACAGATTGAATGGTAGTATAGCTGCATTGTGTAGCTCTAGATCGTTTCTTTCTTTTGATGTTACCAACAATGAGTTTGACAGCGAAATTCCCCCTCAACTGGGAAATTCACCCTCCCTTGAGAGGCTAAGATTAGGTAACAACAAATTTTCTGGTGAAATTCCAAGGACTTTGGGAAGAATCCGTGAGCTTTCATTGTTAGACCTCTCAGGAAATTCACTTACTGGACCAATACCAGCTGAGCTTTCTTTGTGCAATAAACTGGCTTACATTGACTTAAACAGTAATCTTCTTTTTGGACAAATACCATCATGGTTTGGAAGTTTGCCTCAGTTGGGAGAGGTTAAGCTCTCTTCCAATAATTTCTCTGGACCTCTTCCATTAGGCCTATTCAAATGTTCCAAATTGCTAGTTCTCACTCTAAATGACAACTCTCTCAATGGAAGTCTCCCAGCTGATATTGGTGATCTTGCAAACCTTAATGTCCTCAGACTTGACCATAATAGGTTCTCTGGACCAATCCCTCTGGAGATAGGTAAATTGAGCAAGCTTTATGAGGTCCATCTCTCCAGGAATAGCTTTAATGGTGAGATGCCAACTGAGATTGGAAAACTTCAAAATCTCCAAATCATTTTAGACCTAAGTTACAACAATCTCTCTGGTCAAATTCCACCTTCTCTTGGGACTCTATCAAAATTAGAAGCACTTGATCTTTCCCACAATCAACTCACTGGAGAAATCCCTCCACAAGTTGGTGAAATGAGCAGCTTGGGAAAGCTTGATCTCTCTTACAACAACCTTCAAGGGAAATTGGACAAGCAATTCTCCCGCTGGCCAGATGAGGCATTTGAAGGGAACCTACATCTTTGTGGAAGTCCTCTTGACCGCTGCAACAGTGATGATACTTCTGGCAATGAGCAGTCAGGCCTAAGCGGGTCAACAGTTCTGATAATATCTGTCATTTCAACTTTAGCTGCAATTGCATTATTGATATTTGCAGTGAGATTCTTCTGCAAACACAAGCAAGAATTTTTTAGGAAAGACAGTGAAGTGAATTATGTTTACTCTTCATCTTCATCACAAGCACAGAGACGACCACTTTTCCAACTAAATGCTGCTGGAAAGAGAGATTTCAGGTGGGAAGATATCATGGACGCCACAAACAATTTAAGTGATGACTTTATGATTGGTTCAGGAGGTTCAGGGAAAATCTACAAAGCTGAATTGGCCACTGGTGAGACACTGGCTGTCAAGAAGATTTCATCAAAAGATGATTTTCTGTTAAACAAAAGCTTCATAAGAGAAGTTAAGACACTGGGGAGGATTAGGCATAGACATCTGGTGAAGCTAATAGGATATTGCAGCAATAGAAACAAAGAAGCAGGTTGGAATATGTTGATATATGAGTACATGGAGAATGGGAGTATATGGGATTGGCTTCATGGGAAACCAGCCAAGGCTAGCAAAATAAAGAAGAGCCTTGATTGGGAGACAAGGTTGAAAATTGCTGTGGGATTAGCTCAAGGAGTGGAGTACCTCCATCATGATTGTGTGCCAAAGATCATTCACAGGGACATCAAGTCCAGCAACGTATTGCTAGATTCCAAAATGGAGGCACACTTGGGAGATTTTGGATTGGCAAAAGCACTCACTGACAATTATGACTCCAATACTGAGTCTAATTCTTGGTTTGCTGGGTCTTATGGCTACATGGCTCCAGAGTATGCATTCTCCCTACGGGCAACAGAAAAAAGTGATGTTTACAGCATGGGAATCGTTCTTATGGAACTTGTTAGTGGTAAAATGCCAACAAATGACATTTTTGGAGCAGAGATGGACATGGTGAGATGGGTGGAGGCGCATATAGATATGCATGGCTCTGCCCGTGAGGAATTGATAGATCCTGAGCTTAAACCTCTTTTACCTGGCGAAGAGCTTGCTGCATTCCAAGTGCTTGAGATAGCCTTACAATGCACCAAAGCTACACCACAAGAGAGGCCATCTTCAAGGAAAGTATGCGATCTTCTCCTCCATGTATTCAACAACAGAATGGTGGACTCTGAGAAGATGAAGTTGCATCGTTACAAGTAA 3816 0.4327 MAAIWRISTFALVMFLVCFSSMLQVLGQGNLDKDATLRVLLEVKKSFVLDPQNVLSDWSENNTEYCNWRGVSCGLNSNSLDDDSGQVVGLNLSDSSLTGSISPSLGRLQNLLHLDLSSNNLMGPIPPNLSNLTSLESLLLFSNQLTGHVPAELGSLMSLRVMRLGDNALTGMIPASLGNLFNLVNLGLASCGLTGSIPPQLGQLSLLENLILQDNELMGPIPTELGNCSSLTVFTAADNKLNGSIPSELGQLKNLQILNLANNSLSGQIPSQLGDMSELVYMNFMGNQLEGAIPPSLAQLGNLQNLDLSMNKLSGGIPEEFGNMGQLAYLVLSGNYLNGVIPRTICSNATSLEHLMLSESGLHGEIPAELGLCQSLKQLDLSNNSLNGSIPLELYGLVGLTDLLLNNNSLIGSISPFIGNLSSLQTLAFFHNNLQGALPREIGMLSKLEILYLYDNQLSGDIPMEIGNCSSLQMIDFFGNRFSGEIPITIGRLKELNFLHLRQNELVGEIPATLGNCYKLNILDLADNQLSGAIPPTFGFLKALQQLMLYNNSLEGNLPHQLINVANLTRVNLSKNRLNGSIAALCSSRSFLSFDVTNNEFDSEIPPQLGNSPSLERLRLGNNKFSGEIPRTLGRIRELSLLDLSGNSLTGPIPAELSLCNKLAYIDLNSNLLFGQIPSWFGSLPQLGEVKLSSNNFSGPLPLGLFKCSKLLVLTLNDNSLNGSLPADIGDLANLNVLRLDHNRFSGPIPLEIGKLSKLYEVHLSRNSFNGEMPTEIGKLQNLQIILDLSYNNLSGQIPPSLGTLSKLEALDLSHNQLTGEIPPQVGEMSSLGKLDLSYNNLQGKLDKQFSRWPDEAFEGNLHLCGSPLDRCNSDDTSGNEQSGLSGSTVLIISVISTLAAIALLIFAVRFFCKHKQEFFRKDSEVNYVYSSSSSQAQRRPLFQLNAAGKRDFRWEDIMDATNNLSDDFMIGSGGSGKIYKAELATGETLAVKKISSKDDFLLNKSFIREVKTLGRIRHRHLVKLIGYCSNRNKEAGWNMLIYEYMENGSIWDWLHGKPAKASKIKKSLDWETRLKIAVGLAQGVEYLHHDCVPKIIHRDIKSSNVLLDSKMEAHLGDFGLAKALTDNYDSNTESNSWFAGSYGYMAPEYAFSLRATEKSDVYSMGIVLMELVSGKMPTNDIFGAEMDMVRWVEAHIDMHGSAREELIDPELKPLLPGEELAAFQVLEIALQCTKATPQERPSSRKVCDLLLHVFNNRMVDSEKMKLHRYK. 1272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05482 1271 Gene3D Ribonuclease Inhibitor 235 395 IPR032675 -
Seca12g05482 1271 Pfam Protein kinase domain 970 1248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05482 1271 Gene3D Ribonuclease Inhibitor 35 154 IPR032675 -
Seca12g05482 1271 Gene3D Ribonuclease Inhibitor 487 585 IPR032675 -
Seca12g05482 1271 Pfam Leucine rich repeat 758 818 IPR001611 GO:0005515
Seca12g05482 1271 SMART serkin_6 965 1256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05482 1271 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1096 1108 IPR008271 GO:0004672|GO:0006468
Seca12g05482 1271 ProSiteProfiles Leucine-rich repeat profile. 807 829 IPR001611 GO:0005515
Seca12g05482 1271 FunFam Leucine-rich repeat receptor-like protein kinase 1046 1268 - -
Seca12g05482 1271 ProSitePatterns Protein kinases ATP-binding region signature. 971 994 IPR017441 GO:0005524
Seca12g05482 1271 Gene3D Ribonuclease Inhibitor 155 234 IPR032675 -
Seca12g05482 1271 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 33 200 - -
Seca12g05482 1271 SUPERFAMILY L domain-like 592 850 - -
Seca12g05482 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 926 1045 - -
Seca12g05482 1271 SUPERFAMILY L domain-like 46 391 - -
Seca12g05482 1271 Gene3D Ribonuclease Inhibitor 586 880 IPR032675 -
Seca12g05482 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 293 392 - -
Seca12g05482 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 584 876 - -
Seca12g05482 1271 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 634 1251 - -
Seca12g05482 1271 SUPERFAMILY L domain-like 346 672 - -
Seca12g05482 1271 ProSiteProfiles Protein kinase domain profile. 965 1256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca12g05482 1271 Gene3D Transferase(Phosphotransferase) domain 1 1046 1269 - -
Seca12g05482 1271 PRINTS Leucine-rich repeat signature 376 389 - -
Seca12g05482 1271 PRINTS Leucine-rich repeat signature 805 818 - -
Seca12g05482 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 487 583 - -
Seca12g05482 1271 SUPERFAMILY Protein kinase-like (PK-like) 949 1251 IPR011009 -
Seca12g05482 1271 Pfam Leucine rich repeat N-terminal domain 38 73 IPR013210 -
Seca12g05482 1271 Gene3D Phosphorylase Kinase; domain 1 925 1045 - -
Seca12g05482 1271 SMART LRR_typ_2 445 469 IPR003591 -
Seca12g05482 1271 SMART LRR_typ_2 684 708 IPR003591 -
Seca12g05482 1271 SMART LRR_typ_2 636 660 IPR003591 -
Seca12g05482 1271 SMART LRR_typ_2 300 323 IPR003591 -
Seca12g05482 1271 SMART LRR_typ_2 252 276 IPR003591 -
Seca12g05482 1271 SMART LRR_typ_2 541 565 IPR003591 -
Seca12g05482 1271 SMART LRR_typ_2 493 517 IPR003591 -
Seca12g05482 1271 SMART LRR_typ_2 324 348 IPR003591 -
Seca12g05482 1271 SMART LRR_typ_2 805 827 IPR003591 -
Seca12g05482 1271 SMART LRR_typ_2 132 156 IPR003591 -
Seca12g05482 1271 SMART LRR_typ_2 204 228 IPR003591 -
Seca12g05482 1271 SMART LRR_typ_2 397 421 IPR003591 -
Seca12g05482 1271 SMART LRR_typ_2 829 860 IPR003591 -
Seca12g05482 1271 SMART LRR_typ_2 108 131 IPR003591 -
Seca12g05482 1271 SMART LRR_typ_2 732 756 IPR003591 -
Seca12g05482 1271 Gene3D Ribonuclease Inhibitor 396 486 IPR032675 -
Seca12g05482 1271 FunFam Uncharacterized protein 393 486 - -
Seca12g05482 1271 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 206 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05482 Seca-Chr12 145708334 145713288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05482 39 709 Receptor kinase-like Gene Family AT1G17750 37.371 8.57e-104 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca12g05482 Pkinase 1.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05482 - - gmx:100801889 2139