Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05479 ATGGCATGGAACAATTTGAACCACACCACAACCCTTCATCCCCACCCCAACCCATGCCATATCCTCGATTTGGTGGAGATGAGTTCACTGTCACCATACTCACTTGGGACTTGCCTTTCTTCCCTACAACCCCAAAAAATTAGTAACAACTATTCAGCACCTAAATCATCACCCCTTAGTTACATAACATGTGCTGTCCAAGTCAAACCACTAGCAGTGGCACAAAACGAGAGGCAATTCAAGAGAAGAGATGCAATAGGCCTTGCCTTGAGTTTTGGCCTTCTTCATTCTTTCTTGCAACCACAACCCACATCAGCAGCAGAAACAGTTCCATGTGAATTACAATCAGCTCCTTCAGGCCTTGCCTACTGTGATAAACTTGTTGGCACAGGTCCTCAAGCTGTTAAGGGACAGCTTATTAAAGCACATTATGTTGGGAGATTGGAGAATGGGAAAATTTTCGACAGCAGCTATAATCGTGGCAAGCCACTCACATTTCGTGTGGGTGTTGGAGAGGTCATCAAAGGATGGGATGAAGGCATTCTAGGAGGTGATGGAGTTCCTCCCATGCTTGCAGGAGGGAAACGTACACTGAAGATTCCTCCAGAACTTGGATATGGCTCCAGAGGGGCTGGTTGTAGAGGAGGCAAGTACTCTTTCCTTTCTTTTGTCTGCTAA 678 0.4602 MAWNNLNHTTTLHPHPNPCHILDLVEMSSLSPYSLGTCLSSLQPQKISNNYSAPKSSPLSYITCAVQVKPLAVAQNERQFKRRDAIGLALSFGLLHSFLQPQPTSAAETVPCELQSAPSGLAYCDKLVGTGPQAVKGQLIKAHYVGRLENGKIFDSSYNRGKPLTFRVGVGEVIKGWDEGILGGDGVPPMLAGGKRTLKIPPELGYGSRGAGCRGGKYSFLSFVC. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05479 225 FunFam Peptidylprolyl isomerase 109 222 - -
Seca12g05479 225 SUPERFAMILY FKBP-like 115 223 - -
Seca12g05479 225 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 4, CHLOROPLASTIC 108 217 IPR044183 GO:0009507
Seca12g05479 225 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 132 211 IPR001179 GO:0003755
Seca12g05479 225 Gene3D - 108 224 IPR046357 GO:0003755
Seca12g05479 225 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 137 225 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05479 Seca-Chr12 145672645 145675419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05479 137 211 Calmodulin-binding Proteins AT5G48570 45.333 5.05e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05479 K01802 - gmx:100778390 244.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05479 12 145672645 145675419 Seca12g05479 12 145672645 145675419 ECH