Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05469 ATGAGTTCTGGTGATAAACAAGAAGCTGATCAAAACTCAGGCAAGAAACGAGTGATGCGTCGTCACAAAGATCATCAGAGAGCTAGACTTGAAGAAGTGTTCAAGATATGCCAACATATAGATAAAAACCAACAACATCAATTAGGCATGGAACTTGGACTTGAGCCAACACAAATAAAATTTTGGTTTCAAAATAAGAGGACACAAGTAAAGGCACTATCTGAACGATCTATTAACTATGCCCTGCGGCTAGAGAATGAAAAGATACAATCAGAAAACATCCAATTAAGAGAGACTTTAAAGAAGTTGCCTTGCTTGTCTTGTGGGGGTCCAATCTTAGTGGAGGAAGATGATCACGAGACTTGTATGGAAAAGTTAAGGTTGGAAAATGCATGGTTACTTCAACAGCATGAGAAATTATCCAAGCTTTTGGCAAGCAAAAACGATGAGGAAAATCCAATTTTGCAACCTACCCTTACATCTTCCCATGATCCACCACAAGAAAGTTTGCTAAACCAAAATGTTGAAATTCCTACTCTTGAGATAAATCCAATAGTGCCTTCTACTATTCCATCTTCATCCCAACATGATCCATCACATGGAAGTAATTTGCTAAACCAAAACATTGAAAACCCTACTCATGATATAAATCCAATTGTATCTTCTACCCTTCCATCTTCACCAAAGCATGATCCATCACATGGAAATTTTCCAAACCAAAACATTGAAATTCCTTCTCCTATGATGATAGATCCAATCCTGCCTCCTACCCTTCTATCTTCAAATGATCATCCCTTACAAGGAAGTTTGCTAAACCAAACCTTTCCAATTCTACTTCAAACCCTTCCATCTTCAAATGATCCTTTACAAGGAAGTTTGTTAAACCAAAACATTGAAACCCTTGCTATTGATCATCAAAACATTCCTACCATTACTTCCCTTGACCAAAATGTTTCTAATATTACTCCTGAGCCTAATCAGAATGTTCCTGCCCATGATAATGAAGATATTTATGCCTTTGATGAGGATTTTCCTGTTGTTGGTCTAGATTTTGATGCACTTGAAGGAATTTTGGATGATTGTGAGTGGCCTCAGCCAATGAGCACAGATATAGAAAAAGTTTTAATGACTGAGATTGCAAATACTGCTATGGAAGAATTAACAAGGCTTTTGCGTATGAATGAGCCTCTTTGGTTTAGGTCTATGAAAGATGAGAAATTCATTCTTCAGCGTGAAACCTATGAAAAGATATTTCATAGGTTTAGTCGCTTAAAGGGACATATAGAGTCATCAAAAGATTCACGAATAGTGAGCATGGGTGGAACACAATTGGTTGAAATGTTTTTAGATTCGGACAAATGGGTTGATCTTTTCCCAACAATTGTTAGAAAAGCACAAACAATCCAAGTATTTGAAAGCGGATTGTCAAGAAGCCGAAATGGAGCTTTGCAATTGATGAATGCAAAAATGCACATTCTTTCAAAATTGATTCCTTCTCGAGAATTCATCTTCCTTCGTTATTGTAAACAAGTTGAGGAAGGTGTGTGGGTGATAGCAGATGTGTCATTTGATTCCTTAAATTACGAAGAGATTCTTTCTCATACTTGGAGGTTCCCCTCTGGATGCATGATTCAGGAAATTTCGGATGGATCTTGCATGATTTCTTGGGTCGAGCATGTAGAAGTAGATGATAAGATCCAAACTGACCGAAATGAAGTTATTTGTGAAGAAAATGCATATGGAGCAGAAAGATGGGTTTTGACACTTGAAAGAACGTGTGAAAGATTCACACGCACACTTGAAACTATTCCTAGTTCGGATGCTAGAGGAGTGATCAATTCAGTTGAAGGAATGAGGAGCGTGATGCAGCTTGGTCATCGTATGATTAAGCTTTATCATGGAATTTTTGACATGTCAAGTAATGTGGACATATTGAAAAATGGCAAGGTTAGGATATTTGTTCGAAAAAACACAGAGCTAGGACAACCAAAAGGCATGATTGTCAGTGCTGCTACCTTCTTTCGACTTCCTCTATCTCCTCAAAATGTTTTGGACTTCTTGAAAGATATTAGTAAACGACCTCAGTGGGATGTTCTATGCAATGACAATCCAGTGCACGAGATTCAACGCATCTCAACGGGAACAAATTCAGAAAATTCTACTACAATTATTCGGCCTTTCATCCCTAAAGAGAATGCTATATTGATTCTACAAGAAAGTTATATGGATCCATTGGAGTCAATGGTGATATATGCTCCTATGGATATAGAAACATTGAATTATGCAATAAAGGGAGGAGACTCATCACCATTGCCTCTTCTTCCCTCTGGCTTTACCATAACAAGGGATGGTCAACCAAATGTTGTTGGGGGACAATCTGGAGGTTCATTAGTAACTGTTGGGTATCAAATTCTAGCTTGCAGTGCAATGGAGGACTTAAACATGGAAAACTCGGTGGCATTTGTCAATACACTTGTCACCTCAACAGTGAAGAAAATTAAAGTTGCTTTGAGTTGTTGA 2520 0.3786 MSSGDKQEADQNSGKKRVMRRHKDHQRARLEEVFKICQHIDKNQQHQLGMELGLEPTQIKFWFQNKRTQVKALSERSINYALRLENEKIQSENIQLRETLKKLPCLSCGGPILVEEDDHETCMEKLRLENAWLLQQHEKLSKLLASKNDEENPILQPTLTSSHDPPQESLLNQNVEIPTLEINPIVPSTIPSSSQHDPSHGSNLLNQNIENPTHDINPIVSSTLPSSPKHDPSHGNFPNQNIEIPSPMMIDPILPPTLLSSNDHPLQGSLLNQTFPILLQTLPSSNDPLQGSLLNQNIETLAIDHQNIPTITSLDQNVSNITPEPNQNVPAHDNEDIYAFDEDFPVVGLDFDALEGILDDCEWPQPMSTDIEKVLMTEIANTAMEELTRLLRMNEPLWFRSMKDEKFILQRETYEKIFHRFSRLKGHIESSKDSRIVSMGGTQLVEMFLDSDKWVDLFPTIVRKAQTIQVFESGLSRSRNGALQLMNAKMHILSKLIPSREFIFLRYCKQVEEGVWVIADVSFDSLNYEEILSHTWRFPSGCMIQEISDGSCMISWVEHVEVDDKIQTDRNEVICEENAYGAERWVLTLERTCERFTRTLETIPSSDARGVINSVEGMRSVMQLGHRMIKLYHGIFDMSSNVDILKNGKVRIFVRKNTELGQPKGMIVSAATFFRLPLSPQNVLDFLKDISKRPQWDVLCNDNPVHEIQRISTGTNSENSTTIIRPFIPKENAILILQESYMDPLESMVIYAPMDIETLNYAIKGGDSSPLPLLPSGFTITRDGQPNVVGGQSGGSLVTVGYQILACSAMEDLNMENSVAFVNTLVTSTVKKIKVALSC. 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05469 839 MobiDBLite consensus disorder prediction 1 17 - -
Seca12g05469 839 ProSiteProfiles 'Homeobox' domain profile. 13 73 IPR001356 GO:0003677
Seca12g05469 839 ProSiteProfiles START domain profile. 369 598 IPR002913 GO:0008289
Seca12g05469 839 MobiDBLite consensus disorder prediction 185 243 - -
Seca12g05469 839 MobiDBLite consensus disorder prediction 1 24 - -
Seca12g05469 839 Pfam START domain 378 595 IPR002913 GO:0008289
Seca12g05469 839 CDD START_ArGLABRA2_like 373 594 - -
Seca12g05469 839 Gene3D - 2 83 - -
Seca12g05469 839 SMART START_1 378 595 IPR002913 GO:0008289
Seca12g05469 839 MobiDBLite consensus disorder prediction 185 246 - -
Seca12g05469 839 Gene3D - 376 570 IPR023393 -
Seca12g05469 839 SUPERFAMILY Homeodomain-like 10 73 IPR009057 -
Seca12g05469 839 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 14 837 IPR042160 -
Seca12g05469 839 SUPERFAMILY Bet v1-like 646 804 - -
Seca12g05469 839 CDD homeodomain 16 71 IPR001356 GO:0003677
Seca12g05469 839 Pfam Homeodomain 20 71 IPR001356 GO:0003677
Seca12g05469 839 SMART HOX_1 15 77 IPR001356 GO:0003677
Seca12g05469 839 SUPERFAMILY Bet v1-like 368 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05469 Seca-Chr12 145383416 145390084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05469 349 839 Homeobox Transcription Factor Family AT1G17920 42.248 2.16e-118 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca12g05469 START 6.4e-31 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05469 K09338 - gmx:100783586 628.246