Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca12g05468 ATGGATTCTAGCGATAATCAAGAAGTTGAAAACTCAGCCATCGGACGAGGGACTCGTCGTCACACAGCTTATCAGAGAGCTAGGCTCGAAGAAGTATTCAGGAATTGTACTCAACATCCAAATGCCAAGCTACGAGATCAATTAGGTGCTGAGCTTGGACTTGATCCAGAACAAGTTGTCTGTGAGCGATCTAGTAACGATTCCCTTCTACTAGAGAATGAAAAGATAAAATCAGAAAACAACCAACTTAGAGAGACTTTGAAAAACTTGCGTTGCTTGTCTTGTGGCGGTCCAACCTTAGTGGAGAAAGATCATGACACTTGTATGCAAATGTTAAAGATGGAAAATGCAATTTTACATGAAAAGCATGAGAAATTCTCCAAGCTTCTGGCAAGTGCAAACAATGGGACAAATCCAAGTTTGCCAAACCAAAATGTTGAAAATCCAACTCTGAATTCTACACTTCCACCATCAACACATCATGATCCCTCACATGGAAGTTTGCCAAACCAAAACTTTGAAGTTCCTAATTCTCTTGAGATAAATAATCCAATTGATCAGCCTCCAACACTTCCATCATCACCACATGATCATCATCCTACACAAGGAAGTTTGCTAAACCAAAACACTGAAATTCCTGCTCCTGATCAACAAATACCTACTATTACTCCTACCATTGATCAAAACATTCCACCTCTTTCTCCTGGTGATGAGGATCTTCTTAATTTTACCCTTGATGAGGATCTTCCTCCTCTTGATATAGATTTTAGTTCACTTGAAGGAATTTGGGATGATTATGATCAACCCAAACATATGGACACAGTTACTACTGAAGTTATGGAAAAAGATTCAATGATGGAGATTGCAATTAGTGCCATGGAAGAATTGACAAGGATTTTGCATATCAATGAGCCCCTTTGGTGTAGGTCTATATGGGATAATAAATTCATTCTTCAACGTGCAGCATATGAAAACACATTTCATAGGTTTAGGCGCTTAGAGGGACCTCGTGCACATACAGAGTCATCAAAAGATTCAGGAATTGTAAGAATGGGTGGGACACAATTGGTTGAAATGTTTTTAGATGCGGACAAATGGGTTGATCTTTTCCCAACAATAATTACAAAAGCACAAACAATCCAAGTATTTGAAAGCGGTTTGCCAGGAAGCCGAAATGGAGCATTGCAACTGATGAATGCAGAAATGCACATTCTTTCACCTTTGGTTCCATCTCGGGAATTCATCTTCCTTCGTTATTGTAAACAAATTGAAGAAGGTGTGTGGGTAATATCAGATGTGTCATTTGATTCCTCAAAATATGAAGCCATTCTTTCTCGAGCTTGGAAGTTTCCTTCTGGATGCATGATTCACCAAAATACCGATGGATCCTGCAGGGTTTCTTGGGTCGAACATGTAGAAGTGGATGATAAGATTGAACCTAACCAGCTTTCCAGAGAAGTTATTTGTGACAAAAAAGTATATGGAGCGGAAAGATGGGTTTTGACACTTCAAAGAATGTGTGAAAGATTTGGACGCATCTCATTTGAAAATATGCCTAGTTCTGGTGCTAGAGGAGTGATAAGTTCAGCTAAACAAATGAGGAATGTGATGCAACTTGCTAATCGAATGATTAAGGTTTATCATAAAATTTTGAACATGTCAGGTAACATGAATAATAATGACAAGGTTAGGGTATCTGTTCGCAAAAACACAGAGCTAGGGCTGCCAAAGGGCATGATTGTCAGTGCTGTTACCTCATTTTCGCTTCCAGTATGTCCTCAAAATGTTTTGAACCTTTTGAAGGATATTAATAAACGACCTCAGTGGGATGTTCTATGTAATGACAGTCCAGCACTTGAGATTCAACGCATCTCAACTGGAATATACTCTAACAACTGTACTACAATTATTCAGCCTTCCATCCCTAAAGAGAAAGCTGTGTTGATTCTAGAAGAAAGTTATATAGATCCTTTGGAATCTATGTTGGTATATGCTCCTTTGGATATACAATTATTAAATTTTGCATTAATGGGAGAAGACTCTTCATCATTTCCTCTTCTTCCCTCTGGCTTTACCATAATGAGGGATGATCGATCAAATGCTGTTACAAGACAATCTGGAGGTTCATTGGTAACTCTTGGGTACCAACTACTAGTTTGTTCTACAATAGAGAACCTAAACATGGAAAATGTTGTAGCTTCTGTCAATAAACTTGTCATCTCAACAGTGGAGAAATTTAAGAATCTTCTTTGA 2253 0.3839 MDSSDNQEVENSAIGRGTRRHTAYQRARLEEVFRNCTQHPNAKLRDQLGAELGLDPEQVVCERSSNDSLLLENEKIKSENNQLRETLKNLRCLSCGGPTLVEKDHDTCMQMLKMENAILHEKHEKFSKLLASANNGTNPSLPNQNVENPTLNSTLPPSTHHDPSHGSLPNQNFEVPNSLEINNPIDQPPTLPSSPHDHHPTQGSLLNQNTEIPAPDQQIPTITPTIDQNIPPLSPGDEDLLNFTLDEDLPPLDIDFSSLEGIWDDYDQPKHMDTVTTEVMEKDSMMEIAISAMEELTRILHINEPLWCRSIWDNKFILQRAAYENTFHRFRRLEGPRAHTESSKDSGIVRMGGTQLVEMFLDADKWVDLFPTIITKAQTIQVFESGLPGSRNGALQLMNAEMHILSPLVPSREFIFLRYCKQIEEGVWVISDVSFDSSKYEAILSRAWKFPSGCMIHQNTDGSCRVSWVEHVEVDDKIEPNQLSREVICDKKVYGAERWVLTLQRMCERFGRISFENMPSSGARGVISSAKQMRNVMQLANRMIKVYHKILNMSGNMNNNDKVRVSVRKNTELGLPKGMIVSAVTSFSLPVCPQNVLNLLKDINKRPQWDVLCNDSPALEIQRISTGIYSNNCTTIIQPSIPKEKAVLILEESYIDPLESMLVYAPLDIQLLNFALMGEDSSSFPLLPSGFTIMRDDRSNAVTRQSGGSLVTLGYQLLVCSTIENLNMENVVASVNKLVISTVEKFKNLL. 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca12g05468 750 SMART START_1 287 509 IPR002913 GO:0008289
Seca12g05468 750 SUPERFAMILY Homeodomain-like 12 60 IPR009057 -
Seca12g05468 750 SUPERFAMILY Bet v1-like 533 715 - -
Seca12g05468 750 MobiDBLite consensus disorder prediction 132 238 - -
Seca12g05468 750 CDD START_ArGLABRA2_like 285 508 - -
Seca12g05468 750 MobiDBLite consensus disorder prediction 132 187 - -
Seca12g05468 750 Gene3D - 2 88 - -
Seca12g05468 750 MobiDBLite consensus disorder prediction 1 21 - -
Seca12g05468 750 SUPERFAMILY Bet v1-like 280 510 - -
Seca12g05468 750 Coils Coil 66 93 - -
Seca12g05468 750 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 749 IPR042160 -
Seca12g05468 750 ProSiteProfiles START domain profile. 278 512 IPR002913 GO:0008289
Seca12g05468 750 Pfam START domain 288 509 IPR002913 GO:0008289
Seca12g05468 750 CDD homeodomain 16 59 IPR001356 GO:0003677
Seca12g05468 750 Gene3D - 324 492 IPR023393 -
Seca12g05468 750 Pfam Homeodomain 19 59 IPR001356 GO:0003677
Seca12g05468 750 MobiDBLite consensus disorder prediction 196 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca12g05468 Seca-Chr12 145354114 145359130 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca12g05468 19 750 Homeobox Transcription Factor Family AT1G34650 33.683 2.48e-118 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca12g05468 START 3.4e-33 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca12g05468 K09338 - gmx:100783586 608.986